View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19270_low_30 (Length: 267)

Name: NF19270_low_30
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19270_low_30
NF19270_low_30
[»] chr1 (5 HSPs)
chr1 (1-261)||(40689896-40690156)
chr1 (4-80)||(34710513-34710589)
chr1 (14-80)||(34714219-34714285)
chr1 (167-255)||(34714363-34714448)
chr1 (192-243)||(34710689-34710740)
[»] chr4 (1 HSPs)
chr4 (5-82)||(20925729-20925806)
[»] chr2 (1 HSPs)
chr2 (13-82)||(35506177-35506246)


Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 40689896 - 40690156
Alignment:
Q  1 taacaacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgaggcgtcaccgcgcgccggtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  40689896 taacaacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgaggcgccaccgtgcaccggtg 40689995  T
Q  101 ggaacatctgcagccaacactacactctctttgacaccaatggctttggaacctgatgaagatcatcctagaaagaaaaggaatgttttgtctttggatt 200  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689996 ggaacttctgcagccaacaccacactctctttgacaacaatggctttggaacctgatgaagatcatcctagaaagaaaaggaatgttttgtctttggatt 40690095  T
Q  201 tggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctttgcttc 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40690096 tggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctttgcttc 40690156  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 34710513 - 34710589
Alignment:
Q  4 caacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatga 80  Q
    |||||| || |||||| ||| ||| ||||||||||||||| ||||||||||||| || ||||| |||||||||||||    
T  34710513 caacaaatccaaggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatga 34710589  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 34714219 - 34714285
Alignment:
Q  14 aaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatga 80  Q
    |||||| ||| ||| ||||||||||||||| ||||||||||||| || ||||| |||||||||||||    
T  34714219 aaggtttatgggtgctccatttgtggttctaaattcacatctggccaggcacttggtggccatatga 34714285  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 34714363 - 34714448
Alignment:
Q  167 cctagaaagaaaaggaatgttttgtctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatctaagtttgcctt 255  Q
    ||||||||||||| |||||| |   ||||||||||||||||||||||||||||| || |||| ||||| ||||| |  |||||||||||    
T  34714363 cctagaaagaaaatgaatgtct---ctttggatttggatctcaaccttcctgcagcttaagaagatcaaagagagttcaagtttgcctt 34714448  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 34710689 - 34710740
Alignment:
Q  192 ctttggatttggatctcaaccttcctgcacctgaagatgatcatagagaatc 243  Q
    ||||||||||||||||||||||||||||| || |||| ||||| ||||||||    
T  34710689 ctttggatttggatctcaaccttcctgcagcttaagaagatcaaagagaatc 34710740  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 20925806 - 20925729
Alignment:
Q  5 aacaagtctaaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgagg 82  Q
    |||||| | ||| ||||||||||||||||||||||||| || |||||||| || |||||| | ||||| || ||||||    
T  20925806 aacaaggccaagattcatgagtgttccatttgtggttcagagttcacatccggacaagcattgggtggacacatgagg 20925729  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 35506177 - 35506246
Alignment:
Q  13 taaggttcatgagtgttccatttgtggttctgaattcacatctggtcaagcactaggtggccatatgagg 82  Q
    ||||||||||| |||||| || |||||  ||||||||||||| ||||||||| | ||||| || ||||||    
T  35506177 taaggttcatgggtgttcaatatgtggagctgaattcacatcaggtcaagcattgggtggtcacatgagg 35506246  T

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