View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_35 (Length: 255)
Name: NF19270_low_35
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 5558541 - 5558784
Alignment:
| Q |
1 |
ttagctatttcaaaatatctatagagattaagactttcacacttgtaattaagttttaattgacagtttatgaccaaataactcaagataagctattatc |
100 |
Q |
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| T |
5558541 |
ttagctatttcaaaatatctatagagattaagactttcacacttgtaattaagttttaattgacagtttatgaccaaataactcaagataagctat---c |
5558637 |
T |
|
| Q |
101 |
caagcttcataatttacttcattatttaaacatttgattgataatttgcacgtgaattttgtttgttattcttgttcaaaatcatcattgctatcaatgg |
200 |
Q |
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| T |
5558638 |
caagcttcatattttacttcattatttaaacatttgattgataatttgcacatgaattttgttttttattcttgttcaaaatcatcattgctatcaatgg |
5558737 |
T |
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| Q |
201 |
aataattagctaataaatcaacaattacttggcctctcattcatctc |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5558738 |
aataattagctaataaatcaacaattacttggcctctcattcctctc |
5558784 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 30790061 - 30790119
Alignment:
| Q |
1 |
ttagctatttcaaaatatctatagagattaagactttcacacttgtaattaagttttaa |
59 |
Q |
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|||||||||||||||||||| | ||||||||||||||||| || |||||| ||||||| |
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| T |
30790061 |
ttagctatttcaaaatatctgaatagattaagactttcacatttataattatgttttaa |
30790119 |
T |
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