View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19270_low_39 (Length: 248)

Name: NF19270_low_39
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19270_low_39
NF19270_low_39
[»] chr4 (10 HSPs)
chr4 (12-175)||(48160370-48160533)
chr4 (170-246)||(48167351-48167427)
chr4 (87-218)||(48155520-48155643)
chr4 (121-173)||(45371134-45371186)
chr4 (111-173)||(43595949-43596011)
chr4 (125-219)||(48146910-48146998)
chr4 (121-179)||(48864923-48864981)
chr4 (130-172)||(49043378-49043420)
chr4 (12-61)||(48155193-48155242)
chr4 (121-170)||(48734500-48734549)
[»] chr6 (2 HSPs)
chr6 (12-213)||(14197124-14197318)
chr6 (130-167)||(21017301-21017338)
[»] chr5 (1 HSPs)
chr5 (121-172)||(29711600-29711651)
[»] chr1 (1 HSPs)
chr1 (121-173)||(24368009-24368062)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 48160370 - 48160533
Alignment:
Q  12 atgaatctagaacaggtcgcagattttgcaatttttaggggaaattaaaaacagtaacagtaaagcataattgaaattaataagacaaccacatctagca 111  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |||||    
T  48160370 atgaatctagaacaggttgcagattttgcaatttttaggggaaattaaaaactgtaacagtaaagcataattgaaattaataagacaaacacctttagca 48160469  T
Q  112 gatttggtaatcttgatgaacatgcataaactcatcaaattaattacaatataaaacaatttta 175  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  48160470 gatttggtaatcttgatcaacatgcataaactcatcaaattaattacaatataaaacaatttta 48160533  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 48167351 - 48167427
Alignment:
Q  170 attttaagcaagcagtcaccacatcatatacattagaactcaatccagttgcacttacacattcgtaacttacagtg 246  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48167351 attttaagcaagcagtgaccacatcatatacattagaactcaatccagttgcacttacacattcgtaaattacagtg 48167427  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 218
Target Start/End: Original strand, 48155520 - 48155643
Alignment:
Q  87 attaataagacaaccacatctagcagatttggtaatcttgatgaacatgcataaactcatcaaattaattacaatataaaacaattttaagcaagcagtc 186  Q
    ||||||||||||||||| | ||||||||||||||||| |||  ||||||||||||||||  |||| ||||| || ||||||||||||    |||||| |     
T  48155520 attaataagacaaccacctttagcagatttggtaatcctgaccaacatgcataaactca--aaataaattaaaaaataaaacaattt----caagcaatg 48155613  T
Q  187 accacatcatatacattagaactcaatccagt 218  Q
    ||||||  | ||||||||||||||||||||||    
T  48155614 accaca--acatacattagaactcaatccagt 48155643  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 45371134 - 45371186
Alignment:
Q  121 atcttgatgaacatgcataaactcatcaaattaattacaatataaaacaattt 173  Q
    |||||||| |||||||||||| |||| |||| ||||||| |||||||||||||    
T  45371134 atcttgatcaacatgcataaattcataaaataaattacattataaaacaattt 45371186  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 43595949 - 43596011
Alignment:
Q  111 agatttggtaatcttgatgaacatgcataaactcatcaaattaattacaatataaaacaattt 173  Q
    ||||||||| |||||| |  |||||||||||||| | |||| |||||||| ||||||||||||    
T  43595949 agatttggtgatcttggtatacatgcataaactcgtaaaataaattacaaaataaaacaattt 43596011  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 48146910 - 48146998
Alignment:
Q  125 tgatgaacatgcataaactcatcaaattaattacaatataaaacaattttaagcaagcagtcaccacatcatatacattagaactcaatccagtt 219  Q
    |||| |||||| | |||||||| |||| |||||||||||| ||||||||    || ||||| ||||||  | |||||||||||||||||||||||    
T  48146910 tgatcaacatgtagaaactcataaaataaattacaatatagaacaattt----caggcagtgaccaca--acatacattagaactcaatccagtt 48146998  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 48864981 - 48864923
Alignment:
Q  121 atcttgatgaacatgcataaactcatcaaattaattacaatataaaacaattttaagca 179  Q
    |||||||| |||||||| | | ||| ||||| ||||||||||||||||||||| |||||    
T  48864981 atcttgatcaacatgcaaacattcagcaaataaattacaatataaaacaatttcaagca 48864923  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 49043378 - 49043420
Alignment:
Q  130 aacatgcataaactcatcaaattaattacaatataaaacaatt 172  Q
    |||||||||||||||||||||| ||||||||| || |||||||    
T  49043378 aacatgcataaactcatcaaataaattacaatttataacaatt 49043420  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 48155193 - 48155242
Alignment:
Q  12 atgaatctagaacaggtcgcagattttgcaatttttaggggaaattaaaa 61  Q
    |||| ||||||||||||  ||||||| ||||||| |||||||||||||||    
T  48155193 atgactctagaacaggtaccagatttggcaatttgtaggggaaattaaaa 48155242  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 48734500 - 48734549
Alignment:
Q  121 atcttgatgaacatgcataaactcatcaaattaattacaatataaaacaa 170  Q
    |||||||| |||||||||||| ||||||||| ||||||  ||||||||||    
T  48734500 atcttgatcaacatgcataaattcatcaaataaattacggtataaaacaa 48734549  T

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Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 14197124 - 14197318
Alignment:
Q  12 atgaatctagaacaggtcgcagattttgcaatttttaggggaaattaaaaacagtaacagtaaagcataattgaaattaataagacaaccacatctagca 111  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||  ||| | |||||    
T  14197124 atgaatctagaacaggtcgcagattttgcaattta---gggaaattaaaaacagtaacagtaaagcataattgaaattaataagacattcacctttagca 14197220  T
Q  112 gatttggtaatcttgatgaacatgcataaactcatcaaattaattacaatataaaacaattttaagcaagcagtcaccacatcatatacattagaactca 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||| |||||||||||||| || |||||||    
T  14197221 gatttggtaatcttgatgaacatgcataaactcatcaaattaattacaatataaaacaatttt----aagcagtgaccacatcatataccttggaactca 14197316  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 21017338 - 21017301
Alignment:
Q  130 aacatgcataaactcatcaaattaattacaatataaaa 167  Q
    |||||||||||||||||||||| |||||||||||||||    
T  21017338 aacatgcataaactcatcaaataaattacaatataaaa 21017301  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 29711600 - 29711651
Alignment:
Q  121 atcttgatgaacatgcataaactcatcaaattaattacaatataaaacaatt 172  Q
    |||||||| |||||||||||||||||||||| ||| | ||||||||||||||    
T  29711600 atcttgatcaacatgcataaactcatcaaatcaatgaaaatataaaacaatt 29711651  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 24368062 - 24368009
Alignment:
Q  121 atcttgatgaacatgcataaactcatcaaattaa-ttacaatataaaacaattt 173  Q
    |||||||| |||||| |||||||||||||| ||| |||| ||||||||||||||    
T  24368062 atcttgatcaacatggataaactcatcaaactaatttaccatataaaacaattt 24368009  T

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