View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_41 (Length: 244)
Name: NF19270_low_41
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 50 - 233
Target Start/End: Original strand, 49254705 - 49254891
Alignment:
| Q |
50 |
tattcaattttctgggctagaaaatatggataaaggtttgttagagaaagacacagagggtg---gttcaagaagcataacatggcgtgtattttttcaa |
146 |
Q |
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| T |
49254705 |
tattcaattttctgggctagaaaatatggaaaaaggtttgttagagaaagacagagagggtgctggttcaagaagcataacatggggtgtattttttcaa |
49254804 |
T |
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| Q |
147 |
gaggtgaaagatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatg |
233 |
Q |
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| T |
49254805 |
gaggtgaaagatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatg |
49254891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 49266985 - 49267149
Alignment:
| Q |
65 |
gctagaaaatatggataaaggtttgttagagaaagacacagagggtggttcaagaagcataacatggcgtgtattttttcaagaggtgaaagatgtttgt |
164 |
Q |
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| T |
49266985 |
gctagaaaatatggaaaagggtttgttagagaaagacagagaaggtgattcaagaagcataacatggggtgtattttttcaagaggtgaaagatgtttgt |
49267084 |
T |
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| Q |
165 |
tttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgat |
229 |
Q |
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| T |
49267085 |
tttctagctctgcctatgatcgccgtcactctgtcacaatattttctacaaattatttcaatgat |
49267149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 121 - 233
Target Start/End: Original strand, 49271447 - 49271559
Alignment:
| Q |
121 |
gcataacatggcgtgtattttttcaagaggtgaaagatgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattat |
220 |
Q |
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| T |
49271447 |
gcatatcatggggtgtgtttgttcaagaggtagaagatgttggttttctagctttgcctatgattagtgtaactttgtcacaatattttctacaaattat |
49271546 |
T |
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| Q |
221 |
ttcaatgatgatg |
233 |
Q |
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| T |
49271547 |
ttcaatgatgatg |
49271559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 157 - 233
Target Start/End: Complemental strand, 49274761 - 49274685
Alignment:
| Q |
157 |
atgtttgttttctagcattgcctatgattagtgtaactttgtcacaatattttctacaaattatttcaatgatgatg |
233 |
Q |
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| T |
49274761 |
atgttggttttctagctttgcctatgactagtgtaactttgtcacaatattttctacaaattatttcaatgatgatg |
49274685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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