View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_42 (Length: 240)
Name: NF19270_low_42
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_42 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 8715970 - 8715748
Alignment:
| Q |
18 |
agttcctgtgctgatgacagcatacgtatgtcactacaatggtatcgaatagtttgaaacctttctcttaatgtttttattactctcaatagacttgtat |
117 |
Q |
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| T |
8715970 |
agttccggtgctgatgacagcatacgtatgtcactacaatggtatcgaatagtttgaaacctttctcttaatgtttttattactctcaatagacttgtat |
8715871 |
T |
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| Q |
118 |
aattgtaagttggttatggataagaatcacgtcattctatgtccaactaatctgaaaagaaaccatgtctgtcaattttttatgagctaaaaaatttatt |
217 |
Q |
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| T |
8715870 |
aattgtaagttggttatggataagaatcacgtcattctatgtccaactaatctgaaaagaaaccatgtctgtcaattttttatgagctaaaaaatttatt |
8715771 |
T |
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| Q |
218 |
ttcaggttattttggttaattcc |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
8715770 |
ttcaggttattttggttaattcc |
8715748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 5968122 - 5968242
Alignment:
| Q |
18 |
agttcctgtgctgatgacagcatacgtatgtcactacaatggtatcgaatagtttgaaacctttctcttaatgtttttattactctcaatagacttgtat |
117 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
5968122 |
agttcctgtgctgatgacagcatatgtatgtcactacaatggtatcgaatagtttgaaacctttctcttaatgtttttatttctctcagtagacttgtat |
5968221 |
T |
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| Q |
118 |
aattgtaagttggttatggat |
138 |
Q |
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| T |
5968222 |
aattataagttggttatggat |
5968242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 5968282 - 5968383
Alignment:
| Q |
137 |
ataagaatcacgtcattctatgtccaactaatctgaaaagaaaccatgtctgtcaattttttatgagctaaaaaatttattttcaggttattttggttaa |
236 |
Q |
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| T |
5968282 |
ataagcatcacctcattctatgtccaactaatctgaaaagtaagcatacgtgtcaattttttatgagctacaaaattgattttcagattattttggttaa |
5968381 |
T |
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| Q |
237 |
tt |
238 |
Q |
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|| |
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| T |
5968382 |
tt |
5968383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 143 - 210
Target Start/End: Original strand, 5934700 - 5934767
Alignment:
| Q |
143 |
atcacgtcattctatgtccaactaatctgaaaagaaaccatgtctgtcaattttttatgagctaaaaa |
210 |
Q |
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| T |
5934700 |
atcacctcatcctatgtccaactaatttgaaaagaaaccgtgtctgtcaaccttttttgagctaaaaa |
5934767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 5963105 - 5963166
Alignment:
| Q |
20 |
ttcctgtgctgatgacagcatacgtatgtcactacaatggtatcgaatagtttgaaaccttt |
81 |
Q |
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| T |
5963105 |
ttcctgtgctgatgacagcttatatctgtcactacaatggtatgaaattgtttgaaaccttt |
5963166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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