View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_43 (Length: 238)
Name: NF19270_low_43
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_43 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 238
Target Start/End: Original strand, 8715319 - 8715548
Alignment:
| Q |
9 |
acatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggacgtacgcacaaccccac |
108 |
Q |
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| T |
8715319 |
acatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggatgtacgcacaaccccac |
8715418 |
T |
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| Q |
109 |
gtatccgtgaggaatcctccagttcattctctatgctttgaactgaaaacaaagagcacacaatgtaatcaccatataataaatctatgaagcaaacaag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8715419 |
gtatccgtgaggaatcctccagttcattctctatgctttgaactgaaaacaaagagcacacaatgtaatcaccagataataaatctatgaagcaaacaag |
8715518 |
T |
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| Q |
209 |
tggatctatatagctaactgcattgatgtt |
238 |
Q |
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| T |
8715519 |
tggatctatatagctaactgcattgatgtt |
8715548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 5968828 - 5968600
Alignment:
| Q |
9 |
acatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggacgtacgcacaaccccac |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5968828 |
acatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggaagtacgcacaaccccac |
5968729 |
T |
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| Q |
109 |
gtatccgtgaggaatcctccagttcattctctatgctttgaactgaaaacaaagagcacacaatgtaatcaccatataataaatctatgaagcaaacaag |
208 |
Q |
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| T |
5968728 |
gtatccgtgaggaatcctccagttcattctctatgctttgaactgaaaacaaagagcacacactgtaatcaccatataataaatctatgaagcaaacaag |
5968629 |
T |
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| Q |
209 |
tggatctatatagctaactgcattgatgt |
237 |
Q |
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| T |
5968628 |
tggatctatatagctaactgcattgatgt |
5968600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 5984837 - 5984675
Alignment:
| Q |
9 |
acatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggacgtacgcacaaccccac |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| | |
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| T |
5984837 |
acatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggaagtacacacaaccccgc |
5984738 |
T |
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| Q |
109 |
gtatccgtgaggaatcctccagttcattctctatgctttgaactgaaaacaaagagcacacaa |
171 |
Q |
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| T |
5984737 |
tcatccgtgaggaatcctccagttcattatctatgctatgaactgcaaataaagagcacacaa |
5984675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 5963695 - 5963533
Alignment:
| Q |
9 |
acatcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggacgtacgcacaaccccac |
108 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||| |||||||||||||||| |
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| T |
5963695 |
acatcatcaagagttccttcaccaaatagaaggaacccaaagaagcttgtcagtacatatactgaagagcatagagtaagggaagtacgcacaaccccac |
5963596 |
T |
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| Q |
109 |
gtatccgtgaggaatcctccagttcattctctatgctttgaactgaaaacaaagagcacacaa |
171 |
Q |
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| T |
5963595 |
gcatccgtgaggaatcctccagttcattatcaatgttatgaactgcaaataaagaacacacaa |
5963533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 5935280 - 5935137
Alignment:
| Q |
27 |
tcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggacgtacgcacaaccccacgtatccgtgaggaatcct |
126 |
Q |
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| T |
5935280 |
tcaccaaatagaaggaacccaaagaagcttgtcagtaagtaaactgaagagcatagagtaagggaagcacgcacaacgccatgcatccatgaggagtcct |
5935181 |
T |
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| Q |
127 |
ccagttcattctctatgctttgaactgaaaacaaagagcacaca |
170 |
Q |
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| T |
5935180 |
ccagttcattatctatgttgtgaactgcaaataaagagcgcaca |
5935137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 5628188 - 5628329
Alignment:
| Q |
12 |
tcatcaagaactccttcaccaaatagaaggaacccaaagaagcttgtcagtaagtacaccgaagagcatagagtaagggacgtacgcacaaccccacgta |
111 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||| ||| ||| ||||| || ||||||||| |||| ||||| ||||| || | | |
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| T |
5628188 |
tcatcaagagttccttcaccaaataggaggaacccaaagaagcttatcattaaatacacggatgagcatagaccgagggctgtacgtacaacgccttgca |
5628287 |
T |
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| Q |
112 |
tccgtgaggaatcctccagttcattctctatgctttgaactg |
153 |
Q |
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|| ||||| ||||| |||||||| |||||||| ||||||| |
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| T |
5628288 |
tctgtgagttgtcctcgagttcattatctatgctgtgaactg |
5628329 |
T |
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