View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19270_low_51 (Length: 215)
Name: NF19270_low_51
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_51 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 48167433 - 48167617
Alignment:
| Q |
14 |
cacagacatttaaagttgtcaatatttccaacaaacatattacctgacaatggtatgtttttgtgagcttccataggtagatgtttttacgacacagcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48167433 |
cacagacatttaaagttgtcaatatttccaacaaacatattacccgacaatggtatgtttttgggagcttccataggaagatgtttttacgacacagcaa |
48167532 |
T |
|
| Q |
114 |
aaatataaatcttctgcacgaacttgtattttcgatacggttcttaaaatttgggtttggtatttcagcaacagtatcttatttg |
198 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48167533 |
aaatataaatcttctgcacaaacttgtattttcgatacggttcttaaaatttgggtttggtatttcagcaacagtatcttatttg |
48167617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University