View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_53 (Length: 207)
Name: NF19270_low_53
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_53 |
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Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 29025037 - 29025194
Alignment:
| Q |
22 |
aatcaatacagttcaaactaaaaatatgtgaaatattgataagtaaagatggttgaagtttatagacaaacccagagcgcatgcacttctctatgcactc |
121 |
Q |
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| T |
29025037 |
aatcaatacagttcaaactaaaaatatgtgaaatattgataagtaaagatggttgaagtttatggacaaacccagagcgcatgcacttctctatgcactc |
29025136 |
T |
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| Q |
122 |
tccgcagaaacgatgcaagcattctcttatagtttttgtttttcgtatgatacctaca |
179 |
Q |
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| T |
29025137 |
tccgcagaaacgatgcaagcattttcttatagtttttgttttccgtaagatacctaca |
29025194 |
T |
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Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 185
Target Start/End: Original strand, 36067706 - 36067873
Alignment:
| Q |
18 |
aaataatcaatacagttcaaactaaaaatatgtgaaatattgataagtaaagatggttgaagtttatagacaaacccagagcgcatgcacttctctatgc |
117 |
Q |
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| T |
36067706 |
aaataatcaacacagttcaaactaaaaatatgtaaaatattgataagtaaatatggtggaagttcaaggaaaaacccaaagcgcatgcacttgtttatgc |
36067805 |
T |
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| Q |
118 |
actctccgcagaaacgatgcaagcattctcttatagtttttgtttttcgtatgatacctacacatata |
185 |
Q |
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| T |
36067806 |
actcttcgcagaaacgatgcagacattctcttatagtttttgttttccgaatgattcctacacatata |
36067873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 35152090 - 35152147
Alignment:
| Q |
26 |
aatacagttcaaactaaaaatatgtgaaatattgataagtaaagatggttgaagttta |
83 |
Q |
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| T |
35152090 |
aatacaatccaaactaaaaatatgtgaaatattgataagtaaagatggtggaagttta |
35152147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 185
Target Start/End: Original strand, 21547987 - 21548073
Alignment:
| Q |
99 |
cgcatgcacttctctatgcactctccgcagaaacgatgcaagcattctcttatagtttttgtttttcgtatgatacctacacatata |
185 |
Q |
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| T |
21547987 |
cgcatgcacttgtctatgcacactttgcaaaagcgatgcatgcattccattgaagttcttgtttttcgaatgatgcctacacatata |
21548073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 35139774 - 35139848
Alignment:
| Q |
111 |
tctatgcactctccgcagaaacgatgcaagcattctcttatagtttttgtttttcgtatgatacctacacatata |
185 |
Q |
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| T |
35139774 |
tctatgcactctctgcaaaagcgatgcaagcactccattacggttcttgtttttcgaatgatgcctacacatata |
35139848 |
T |
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