View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_7 (Length: 463)
Name: NF19270_low_7
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 106 - 456
Target Start/End: Original strand, 40690241 - 40690591
Alignment:
| Q |
106 |
tcttgtcttctctgcaccagctttggtggattgtcattactgagacaagtaacaaggttttggttttggattcaacatgatgatgatcaacaaacaaatt |
205 |
Q |
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| T |
40690241 |
tcttgtcttctctgcaccagctttggtggattgtcattactgagacaagtaacaaggttttggttttggattcaacatgatgatgatcaacaaacaaatt |
40690340 |
T |
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| Q |
206 |
tgtcttgatcatcaacattcaaatctagaaatatatttgttgtaagatattatattcttttgattcattatcaacttgaacaagcacctgataattttta |
305 |
Q |
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| T |
40690341 |
tgtcttgatcatcaacattcaaatctagaaatatatttgttgtaagatattatattcttttgattcattatcaacttgaacaagcacctgataattttta |
40690440 |
T |
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| Q |
306 |
caaaattcagttgtttattgaagaannnnnnnnaatttggtctatgaaaaggtctacacaacaactcatgtatagctcatgttgtgaatctttttcatat |
405 |
Q |
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||||||||||||||||||||||||| | |||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40690441 |
caaaattcagttgtttattgaagaatttttttaattttgttctatgaaaaggcctacacaacaactcatgtatagctcatgttgtgtatctttttcatat |
40690540 |
T |
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| Q |
406 |
taattttttctatttgctctttttattctgtgccaaagaatgtgatgatgt |
456 |
Q |
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| T |
40690541 |
taattttttctatttgctcttttttttctgtgccaaagaatgtgatgatgt |
40690591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 34710777 - 34710848
Alignment:
| Q |
106 |
tcttgtcttctctgcaccagctttggtggattgtcattactgagacaagtaacaaggttttggttttggattca |
179 |
Q |
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|||||| |||| |||||| |||| ||||||||||||||||| ||||||| |||| ||||| |||| ||||||| |
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| T |
34710777 |
tcttgttttctgtgcacctgcttgggtggattgtcattact--gacaagtgacaaagttttagtttgggattca |
34710848 |
T |
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