View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19270_low_8 (Length: 435)
Name: NF19270_low_8
Description: NF19270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19270_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 7 - 387
Target Start/End: Complemental strand, 47732557 - 47732191
Alignment:
| Q |
7 |
aatatatatagggatgaggtttgaacttcggatacgttacttattcatcttcaatatgaatttctagctacttaggctgcttgatcaaaataatttttat |
106 |
Q |
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| T |
47732557 |
aatatatatagggacgaggtttgaactttagataccttatttatttatcttcaatataaatttttagctact-agactgtttgatcaaaataattcttac |
47732459 |
T |
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| Q |
107 |
gattttgagattcatataaaaaagttaatgacaagtgttagttgttatgttagtattttctcctttgttaggattcataccttgaactttaactcattta |
206 |
Q |
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| T |
47732458 |
gattttgagattcatataaaaaagttaatgacaagtgttagttgttatgttaatattttctcaaa----aagattcataccttgaactttaactcattta |
47732363 |
T |
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| Q |
207 |
atccattagctcaacctaataagctacttgcccctaagtgaggttcacattctactttcaacttccttctttcagagtcctatcttgtaatatgaaggga |
306 |
Q |
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| T |
47732362 |
atccattagctcaacctaataagctacttgcccctaagtgaggttcacattctactttcaacttccttctttcagagtcctatcttgtaat--------- |
47732272 |
T |
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| Q |
307 |
cacgtccatgatccattttttatgaacgtgatttgttca-nnnnnnnataagcggtgaattgttcatatgaatatttccata |
387 |
Q |
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| T |
47732271 |
-acgtccatgatccattttttatgaacgtgatttgttcattttttttataagcggtgaattgttcatatgaatatttccata |
47732191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 18722293 - 18722213
Alignment:
| Q |
142 |
tgttagttgttatgttagtattttctcctttgttaggattcataccttgaa-ctttaactcatttaatccattagctcaacc |
222 |
Q |
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| T |
18722293 |
tgttaattgttatgttagcattttctcccttgccaggattcaaaccctgaacctttaactc-tttaatcccttagctcaacc |
18722213 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 5446335 - 5446383
Alignment:
| Q |
175 |
taggattcataccttgaactttaactcatttaatccattagctcaacct |
223 |
Q |
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| T |
5446335 |
taggattcgaaccttgaactttaactcctttaatcatttagctcaacct |
5446383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 12913104 - 12913032
Alignment:
| Q |
148 |
ttgttatgttagtat-tttctcctttgttaggattcataccttgaactttaactcatttaatccattagctca |
219 |
Q |
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| T |
12913104 |
ttgttatgttagtatctttctcccttgctagaattcgaacctggaactttaactcgtttaattccttagctca |
12913032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 26640471 - 26640512
Alignment:
| Q |
142 |
tgttagttgttatgttagtattttctcctttgttaggattca |
183 |
Q |
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| T |
26640471 |
tgttatttgttatgttattattttctcctttgtcaggattca |
26640512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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