View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19271_high_15 (Length: 396)

Name: NF19271_high_15
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19271_high_15
NF19271_high_15
[»] chr8 (2 HSPs)
chr8 (1-381)||(6224075-6224458)
chr8 (273-353)||(28247645-28247724)
[»] chr4 (4 HSPs)
chr4 (4-300)||(37744132-37744434)
chr4 (109-169)||(21318692-21318752)
chr4 (229-299)||(24558124-24558193)
chr4 (1-48)||(24558340-24558387)
[»] chr6 (1 HSPs)
chr6 (194-380)||(24631254-24631438)
[»] chr2 (4 HSPs)
chr2 (111-299)||(27150281-27150471)
chr2 (111-262)||(7703319-7703472)
chr2 (9-176)||(24479909-24480076)
chr2 (1-50)||(27150555-27150604)
[»] chr5 (2 HSPs)
chr5 (192-317)||(31571698-31571822)
chr5 (3-70)||(31571629-31571696)
[»] chr1 (4 HSPs)
chr1 (111-299)||(39367166-39367355)
chr1 (285-372)||(18308968-18309055)
chr1 (116-278)||(12190590-12190750)
chr1 (3-50)||(39367443-39367490)
[»] chr7 (3 HSPs)
chr7 (1-70)||(26618426-26618495)
chr7 (1-70)||(26620398-26620467)
chr7 (1-70)||(26607860-26607929)
[»] chr3 (1 HSPs)
chr3 (1-70)||(25338430-25338499)


Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 6224075 - 6224458
Alignment:
Q  1 agcaacaaaatcatattgatttaagtgttgctactttttgaacagaggaaagatcccacattgttatatt--------gtaaaaccaatcctacgagacc 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||| |||||    
T  6224075 agcaacaaaatcatattgatttaagtgttgctactttttgaacagaggaaagatcccacattgttatattccatgaaagtaaaaccaatcctaccagacc 6224174  T
Q  93 ctaagcacnnnnnnnt---gctagaatcacaataaccacacaacataacatacaagctacctaaatagtgatcaagtatagaaaccagttgaaaaggaaa 189  Q
    ||||||||           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||        |||||||||||||||||    
T  6224175 ctaagcacaaaaaaaaaacgctagaatcacaataaccacacaacataacatacaagctacccaaatagtgatcaa--------accagttgaaaaggaaa 6224266  T
Q  190 aacatgatcaaatcaaacacccctgttgagctgaacagaacaacaatgatcttgttaaactcttgttcaacaagaacaacactcactcaataagagtttc 289  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6224267 aacatgatcaaatcaaacacctctgttgagctgaacagaacaacaatgatcttgttaaactcttgttcaacaagaacaacactcactcaataagagtttc 6224366  T
Q  290 tacaaattaagttgaaagacacactcattgcaagccacgaagcgttcacccttagcattaacccactacagtatgtgttttccccatagttc 381  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||    
T  6224367 tacaaattaagttgaaagatacactcattgcaagccacgaagcgttcacccttagcattaacccccgacggtatgtgttttccccatagttc 6224458  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 28247724 - 28247645
Alignment:
Q  273 cactcaataagagtttctacaaattaagttgaaagacacactcattgcaagccacgaagcgttcacccttagcattaaccc 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  28247724 cactcaataagagtttctacaaattaagttgaaagacacactcattgcaagccacaaagcg-tcacccttagcattaaccc 28247645  T

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Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 4 - 300
Target Start/End: Complemental strand, 37744434 - 37744132
Alignment:
Q  4 aacaaaatcatattgatttaagtgttgctactttttgaacagaggaaagatcccacattgttatatt--------gtaaaaccaatcctacgagacccta 95  Q
    |||||||||  ||||||||||||||||||||||| |||| ||||||| |||| ||||||||||||||        |||||| ||||||||| || ||| |    
T  37744434 aacaaaatccaattgatttaagtgttgctactttctgaagagaggaaggatctcacattgttatattccatgaaagtaaaatcaatcctaccaggcccca 37744335  T
Q  96 agcacnnnnnnntgctagaatcacaataaccacacaacataacatacaagctacctaaatagtgatcaagtatagaaaccagttgaaaaggaaaaacatg 195  Q
    |||          |||||||||||||||||||||||||| | ||||||||||||  ||||  ||||||| |||||||||||| | |||||||||| ||||    
T  37744334 agcgaaaaaaca-gctagaatcacaataaccacacaacagaccatacaagctacacaaattatgatcaaatatagaaaccagctaaaaaggaaaagcatg 37744236  T
Q  196 atcaaatcaaacacccctgttgagctgaacagaacaacaatgatcttgttaaactcttgttcaacaagaacaacactcactcaataagagtttctacaaa 295  Q
    ||||||||||||| | |||||||||||||||||||||||| |||| ||||||||||||||||||  ||||||||||||||||  |||||||||| |||||    
T  37744235 atcaaatcaaacatctctgttgagctgaacagaacaacaaggatcgtgttaaactcttgttcaaacagaacaacactcactc-gtaagagtttccacaaa 37744137  T
Q  296 ttaag 300  Q
    |||||    
T  37744136 ttaag 37744132  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 21318692 - 21318752
Alignment:
Q  109 gctagaatcacaataaccacacaacataacatacaagctacctaaatagtgatcaagtata 169  Q
    ||||||||||||||||||| |||||| ||||||||||||||  ||||||||||||| ||||    
T  21318692 gctagaatcacaataaccatacaacagaacatacaagctactcaaatagtgatcaaatata 21318752  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 299
Target Start/End: Complemental strand, 24558193 - 24558124
Alignment:
Q  229 acaacaatgatcttgttaaactcttgttcaacaagaacaacactcactcaataagagtttctacaaattaa 299  Q
    ||||||| |||| |||||| |||||||||||||| |||||||||||||| |||||| || ||||| |||||    
T  24558193 acaacaaggatcgtgttaagctcttgttcaacaataacaacactcactc-ataagacttcctacacattaa 24558124  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 24558387 - 24558340
Alignment:
Q  1 agcaacaaaatcatattgatttaagtgttgctactttttgaacagagg 48  Q
    |||||||||||| |||| ||||||||||||||||||| |||| |||||    
T  24558387 agcaacaaaatcctattaatttaagtgttgctactttctgaatagagg 24558340  T

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Target: chr6 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 194 - 380
Target Start/End: Complemental strand, 24631438 - 24631254
Alignment:
Q  194 tgatcaaatcaaacacccctgttgagctgaacagaacaacaatgatcttgttaaactcttgttcaacaagaacaacactcactcaataagagtttctaca 293  Q
    |||||||||||||||||| ||||||||| ||||||||||||| |||| | |||||||||||||||||||||||||| ||||||| |||||| ||||||||    
T  24631438 tgatcaaatcaaacaccc-tgttgagcttaacagaacaacaaggatcatattaaactcttgttcaacaagaacaactctcactc-ataagattttctaca 24631341  T
Q  294 aattaagttgaaagacacactcattgcaagccacgaagcgttcacccttagcattaacccactacagtatgtgttttccccatagtt 380  Q
    |||||| | |||||||||||||||| | |||||| ||| | ||| ||||| ||||||||| ||||| || || |||||| |||||||    
T  24631340 aattaactggaaagacacactcattacgagccacaaaggggtcatccttaacattaaccccctacactacgtcttttccgcatagtt 24631254  T

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Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 111 - 299
Target Start/End: Complemental strand, 27150471 - 27150281
Alignment:
Q  111 tagaatcacaataaccacacaacataacatacaagctacctaaatagtgatcaagtatagaaaccagttgaaaaggaaaaacatgatcaaatcaaacacc 210  Q
    |||| ||||||| ||||||||||| ||||||||||||||  ||||||||||||| ||||||||||| | ||||||||||| |||||| ||||||||||||    
T  27150471 tagattcacaattaccacacaacagaacatacaagctactcaaatagtgatcaaatatagaaaccaatcgaaaaggaaaagcatgataaaatcaaacacc 27150372  T
Q  211 cctgttgagctgaacaga-aca--acaatgatcttgttaaactcttgttcaacaagaacaacactcactcaataagagtttctacaaattaa 299  Q
     |||| ||| |||||| | |||  |||| |||| ||||||||||||||||||||| |||||||||||||| |||||| || ||||| |||||    
T  27150371 tctgtagagatgaacaaagacaacacaaggatcatgttaaactcttgttcaacaataacaacactcactc-ataagacttcctacacattaa 27150281  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 111 - 262
Target Start/End: Original strand, 7703319 - 7703472
Alignment:
Q  111 tagaatcacaataaccacacaacataacatacaagctacctaaatagtgatcaagtatagaaaccagttgaaaaggaaaaacatgatcaaatcaaacacc 210  Q
    |||| ||||||| ||||| ||||| ||||||||||||||  |||||||||| || ||||||||||| | ||||||||||| |||||||||||||||||||    
T  7703319 tagattcacaattaccacgcaacagaacatacaagctactcaaatagtgataaaatatagaaaccaatcgaaaaggaaaagcatgatcaaatcaaacacc 7703418  T
Q  211 cctgttgagctgaacagaaca--acaatgatcttgttaaactcttgttcaacaa 262  Q
      ||| ||| ||||||| |||  |||| |||| |||||||||||||||||||||    
T  7703419 tttgtagagatgaacaggacaacacaaggatcatgttaaactcttgttcaacaa 7703472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 9 - 176
Target Start/End: Original strand, 24479909 - 24480076
Alignment:
Q  9 aatcatattgatttaagtgttgctactttttgaacagaggaaagatcccacattgttatatt-gtaaaaccaatcctacgagaccctaagcacnnnnnnn 107  Q
    |||||||||||||||  |||||||||||| |||| ||||||| ||||  | |||||| ||   |||||| ||||||||| | |||||||||||           
T  24479909 aatcatattgatttatatgttgctactttctgaatagaggaaggatctgatattgttgtacaagtaaaatcaatcctaccaaaccctaagcacaaaaaac 24480008  T
Q  108 tgctagaatcacaataaccacacaacataacatacaagctacctaaatagtgatcaagtatagaaacca 176  Q
     | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  24480009 ag-tagaatcacaataaccacacaacataacatacaagctacttaaatagtgatcaaatatagaaacca 24480076  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 27150604 - 27150555
Alignment:
Q  1 agcaacaaaatcatattgatttaagtgttgctactttttgaacagaggaa 50  Q
    |||||||||||| ||||||||||||||||| || ||| ||||||||||||    
T  27150604 agcaacaaaatcctattgatttaagtgttgttaatttctgaacagaggaa 27150555  T

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Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 192 - 317
Target Start/End: Original strand, 31571698 - 31571822
Alignment:
Q  192 catgatcaaatcaaacacccctgttgagctgaacagaacaacaatgatcttgttaaactcttgttcaacaagaacaacactcactcaataagagtttcta 291  Q
    ||||||||||||||||| |  ||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  31571698 catgatcaaatcaaacatctttgttgagctgaacagaataacaaggatcatgttaaactcttgttcaacaataacaacactcactc-ataagagtttcta 31571796  T
Q  292 caaattaagttgaaagacacactcat 317  Q
     |||||||||||||||| ||||||||    
T  31571797 taaattaagttgaaagagacactcat 31571822  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 31571629 - 31571696
Alignment:
Q  3 caacaaaatcatattgatttaagtgttgctactttttgaacagaggaaagatcccacattgttatatt 70  Q
    |||||||||| |||||||||||||||||| ||||| |||||||||||| |||| |||| |||||||||    
T  31571629 caacaaaatcctattgatttaagtgttgccactttctgaacagaggaaggatctcacaatgttatatt 31571696  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 111 - 299
Target Start/End: Complemental strand, 39367355 - 39367166
Alignment:
Q  111 tagaatcacaataaccacacaacataacatacaagctacctaaatagtgatcaagtatagaaaccagttgaaaaggaaaaacatgatcaaatcaaacacc 210  Q
    |||| ||||||| ||||||||||||||||||||||||||  ||||||||| ||| ||||||||||| |  |||||||||| |||||||||||||||||||    
T  39367355 tagattcacaattaccacacaacataacatacaagctactcaaatagtgaacaaatatagaaaccaatcaaaaaggaaaagcatgatcaaatcaaacacc 39367256  T
Q  211 cctgttgagctgaacagaaca--acaatgatcttgttaaactcttgttcaacaagaacaacactcactcaataagagtttctacaaattaa 299  Q
      ||| ||| ||||||| |||  ||||  ||| ||||||||  || |||||||| |||||||||||||| |||||| || ||||| |||||    
T  39367255 tttgtagagatgaacaggacaacacaagaatcatgttaaacattttttcaacaataacaacactcactc-ataagacttcctacacattaa 39367166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 285 - 372
Target Start/End: Original strand, 18308968 - 18309055
Alignment:
Q  285 gtttctacaaattaagttgaaagacacactcattgcaagccacgaagcgttcacccttagcattaacccactacagtatgtgttttcc 372  Q
    |||||||||||||||||||||||||||||||||||||||| |  |||||| |||||||||||||||||| ||||||||||||||||||    
T  18308968 gtttctacaaattaagttgaaagacacactcattgcaagcgagaaagcgtgcacccttagcattaaccccctacagtatgtgttttcc 18309055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 116 - 278
Target Start/End: Original strand, 12190590 - 12190750
Alignment:
Q  116 tcacaataaccacacaacataacatacaagctacctaaatagtgatcaagtatagaaaccagttgaaaaggaaaaacatgatcaaatcaaacacccctgt 215  Q
    ||||||| ||||||||| | ||||||| |  |||  |||| || ||||||||||||||||| | |||||  |||| |||||||||||||||||||  |||    
T  12190590 tcacaattaccacacaatagaacatacga--tactcaaattgtaatcaagtatagaaaccaatcgaaaac-aaaagcatgatcaaatcaaacaccattgt 12190686  T
Q  216 tgagctgaacagaacaacaatgatcttgttaaa-ctcttgttcaacaagaacaacactcactca 278  Q
     ||| ||||||| | ||||| || | ||||||| |||||||||||||| |||||||||||||||    
T  12190687 agagatgaacaggataacaaggaacatgttaaaactcttgttcaacaataacaacactcactca 12190750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 39367490 - 39367443
Alignment:
Q  3 caacaaaatcatattgatttaagtgttgctactttttgaacagaggaa 50  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||    
T  39367490 caacaaaatcctattgatttaagtgttgctactttctgaacagaggaa 39367443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26618495 - 26618426
Alignment:
Q  1 agcaacaaaatcatattgatttaagtgttgctactttttgaacagaggaaagatcccacattgttatatt 70  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||| ||||  |||||||||||||    
T  26618495 agcaacaaaatcctattgatttaagtgttgctactttctgaacagaggaaggatctgacattgttatatt 26618426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26620467 - 26620398
Alignment:
Q  1 agcaacaaaatcatattgatttaagtgttgctactttttgaacagaggaaagatcccacattgttatatt 70  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||| ||||  ||||| |||||||    
T  26620467 agcaacaaaatcctattgatttaagtgttgctactttatgaacagaggaaggatctgacatttttatatt 26620398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 26607929 - 26607860
Alignment:
Q  1 agcaacaaaatcatattgatttaagtgttgctactttttgaacagaggaaagatcccacattgttatatt 70  Q
    |||||||||||| |||||||||||||||||||||||   ||||||||||| ||||  |||||||||||||    
T  26607929 agcaacaaaatcctattgatttaagtgttgctacttccagaacagaggaaggatctgacattgttatatt 26607860  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 25338499 - 25338430
Alignment:
Q  1 agcaacaaaatcatattgatttaagtgttgctactttttgaacagaggaaagatcccacattgttatatt 70  Q
    |||||||||||| |||||||||||||||||||||||| | |||||||||||||| | | |||||||||||    
T  25338499 agcaacaaaatcctattgatttaagtgttgctactttctaaacagaggaaagattcaatattgttatatt 25338430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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