View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_high_17 (Length: 382)
Name: NF19271_high_17
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 53426047 - 53425679
Alignment:
| Q |
1 |
aaactttaaaacatgtgttccaattcttctcccttttcatcagacagcgtaattggcatgttagatacaggttg---attattattttattgttgatata |
97 |
Q |
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| T |
53426047 |
aaacttgaaaacatgttttccaagtcttctccctcttcatcagacatcgtaattggcatgttagatacaggttgctaattattattttattgttgatata |
53425948 |
T |
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| Q |
98 |
aatgaaatatgatttatatataatgtacatgtacataacatacatacatgtttcataattttaacaataagttaattaaatgaacaatgagttattcagg |
197 |
Q |
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| T |
53425947 |
aatgaaatatgatttatatataatgtacatgtacataacatacatacatgtttcataattttaacaataagttaattaaataaacaatgagttattcagg |
53425848 |
T |
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| Q |
198 |
tatatggcctgaagcagcaagtttttcagacaagggaatgggtcctattccacccggttggaaaggcacatgcatggcctcaaaagatttcaattcatcc |
297 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| | |||||||| ||||| |||||| |
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| T |
53425847 |
tatatggccagaagcagcaagtttttcagacaagggaatgggtcctattccacccagttggaaaggcatctgcatgacatcaaaagacttcaactcatcc |
53425748 |
T |
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| Q |
298 |
aactgtaacaggtgtgttgtgaataagatgtttttcatcgatctgaattgattatgattttgtaacaaa |
366 |
Q |
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| T |
53425747 |
aactgtaacaggtgtgttgtgaataagatgtttttcatcgatctgaattgattatgattttgtaacaaa |
53425679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 193 - 310
Target Start/End: Complemental strand, 53434142 - 53434025
Alignment:
| Q |
193 |
tcaggtatatggcctgaagcagcaagtttttcagacaagggaatgggtcctattccacccggttggaaaggcacatgcatggcctcaaaagatttcaatt |
292 |
Q |
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| T |
53434142 |
tcaggtatatggccagaagcagcaagtttttcagacaagggaatgggtcctattccacccggttggaaaggcacatgcatggcctcaaaagatttcaact |
53434043 |
T |
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| Q |
293 |
catccaactgtaacaggt |
310 |
Q |
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| T |
53434042 |
catccaactgtaacaggt |
53434025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 189 - 310
Target Start/End: Original strand, 48371257 - 48371378
Alignment:
| Q |
189 |
ttattcaggtatatggcctgaagcagcaagtttttcagacaagggaatgggtcctattccacccggttggaaaggcacatgcatggcctcaaaagatttc |
288 |
Q |
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|||||||||||||||||| |||||| |||||||||| ||||| ||||||| |||||||||| ||||||||||||||| |||||| | ||||| || ||| |
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| T |
48371257 |
ttattcaggtatatggccagaagcaacaagtttttcggacaatggaatggatcctattccatccggttggaaaggcatttgcatgacatcaaatgacttc |
48371356 |
T |
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| Q |
289 |
aattcatccaactgtaacaggt |
310 |
Q |
| |
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|| ||||| || ||||| |||| |
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| T |
48371357 |
aactcatctaattgtaataggt |
48371378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 53321559 - 53321486
Alignment:
| Q |
190 |
tattcaggtatatggcctgaagcagcaagtttttcagacaagggaatgggtcctattccacccggttggaaagg |
263 |
Q |
| |
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||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| |
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| T |
53321559 |
tattcaggtatatggccaaaagcacaaagtttttcagacaagggaatggatcctattccacctggttggaaagg |
53321486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 26098802 - 26098735
Alignment:
| Q |
243 |
tattccacccggttggaaaggcacatgcatggcctcaaaagatttcaattcatccaactgtaacaggt |
310 |
Q |
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| T |
26098802 |
tattccaaccggttggaatggtacctgcatgacatcaaaagatttcaactcatccaactgtaacaggt |
26098735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 245
Target Start/End: Complemental strand, 26099001 - 26098949
Alignment:
| Q |
193 |
tcaggtatatggcctgaagcagcaagtttttcagacaagggaatgggtcctat |
245 |
Q |
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||||| |||||||| |||||| |||||||||||||||||| |||||||||||| |
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| T |
26099001 |
tcagggatatggccagaagcaccaagtttttcagacaaggaaatgggtcctat |
26098949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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