View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_high_2 (Length: 820)
Name: NF19271_high_2
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 694; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 14 - 804
Target Start/End: Complemental strand, 43552918 - 43552129
Alignment:
| Q |
14 |
tcacctctttatctgtagttattgttcttgttagtatcgttccatttagaagaaaaccacaaacattattgttgatcattgctcacaaggttatgtgggt |
113 |
Q |
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| T |
43552918 |
tcacctctttatctgtagttattgttcttgttagtatcgttccatttagaagaaaaccacaaacattattgttgatcattgctcacaaggttatgtgggt |
43552819 |
T |
|
| Q |
114 |
agctgtggccttcatagcaactggctatgttgcagccacaagggtgattttgccacataatcaagggatgcagtggctatctgttttgctactagcactt |
213 |
Q |
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| T |
43552818 |
agctgtggccttcatggcaactggctatgttgcagccacatgggtgattttgccacataatcaagggatgcagtggctatctgttttgctactagcactt |
43552719 |
T |
|
| Q |
214 |
ggtggtggctccctaggcacaatcttcattggtcttagtgtgatgctagttgaacacagccttaggaaatccaagtggagaaagaaaagaaaggaaattg |
313 |
Q |
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| T |
43552718 |
ggtggtggctccctaggcacaatattcattggtcttagtgtgatgctagttgaacacagccttaggaaatccaagtggagaaagaaaagaaaggaaattg |
43552619 |
T |
|
| Q |
314 |
gggatggagctgctgaatcagataaggaaagtgaaaattcagattttcaaagctcttatctacagggttaccattcatattgattannnnnnnggctcct |
413 |
Q |
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| T |
43552618 |
gggatggagctgctgaatcagataaggaaagtgaaaattcagattttcaaagctcttatctacagggttaccattcatattgattatttttttggctcct |
43552519 |
T |
|
| Q |
414 |
aaattgaaaatattaagtgctatgtgtaaaaaacttgtacattaatatcaatgttagttatgtatattccaaaatatttcctaaaactatttcacaaacc |
513 |
Q |
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| T |
43552518 |
aaattgaaaatattaagtgc--tgtgtaaaaaacttgtacattaatatcaatgttagttatgtatattccaaaatatttcctaaaactatttcacaaacc |
43552421 |
T |
|
| Q |
514 |
agaatcagaacgaagaaattctagcatgctatacacactactctaaaccactaactgcatatct--tatcgcgatatttaccaaattaattttatcttgt |
611 |
Q |
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| T |
43552420 |
agaatcagaacgaagaaattctagcatgctatacacactactctaaaccactaactgcatatcttatatcgcgatatttaccaaattaattttatcttgt |
43552321 |
T |
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| Q |
612 |
ccatttttaagcattcaaaatttgttttaattgaaggcacttcagtttttgaggtattattatcggtgacagtaatgtttaggccactagttttaccctt |
711 |
Q |
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| T |
43552320 |
ccatttttaagcattcaaaatttgttttaattgaaggcacttcagtttttgaggtattattatcggtgacagtaatgtttaggccactagttttaccttt |
43552221 |
T |
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| Q |
712 |
tcctagtcatttgctacgtannnnnnnncccgcggattgctgtaattctgattgttcaattttttggagttgctatacctcatatgtagaatt |
804 |
Q |
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| T |
43552220 |
tcctagtcatttgctatgtatttttttt-ccgcggattgctgtaattttgattgttcaattttttggagttgctatacctcatatgtagaatt |
43552129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 461
Target Start/End: Complemental strand, 43548918 - 43548473
Alignment:
| Q |
16 |
acctctttatctgtagttattgttcttgttagtatcgttccatttagaagaaaaccacaaacattattgttgatcattgctcacaaggttatgtgggtag |
115 |
Q |
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|||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || | |||| |||||||||||||||||||||||| | |
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| T |
43548918 |
acctctttatctgtggttattgttcttgttagtatcattccatttagaagaaaaccacaaacaatactattgaccattgctcacaaggttatgtgggttg |
43548819 |
T |
|
| Q |
116 |
ctgtggccttcatagcaactggctatgttgcagccacaagggtgattttgccacataatcaagggatgcagtggctatctgttttgctactagcacttgg |
215 |
Q |
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| T |
43548818 |
ctgtggcatttatgggaactggttatgttgcagctacatgggtgattttgccacataatcaagagatgcaatggctatctgttgtgctactagcacttgg |
43548719 |
T |
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| Q |
216 |
tggtggctccctaggcacaatcttcattggtcttagtgtgatgctagttgaacacagccttaggaaatccaagtggagaaagaaaagaaaggaaattggg |
315 |
Q |
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||||||| |||||||| || |||||| |||||||||||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||| || |
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| T |
43548718 |
cggtggctttctaggcacgatattcattagtcttagtgtgatgcttgttgaacactggcttaggaaatccagttggagaaagaaaagaaaggaaagcgga |
43548619 |
T |
|
| Q |
316 |
gatggagctgctgaatcagataaggaaagtgaaaattcagattttcaaagctcttatctacagggttaccattcatattgattannnnnnnggctcctaa |
415 |
Q |
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|| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||| |
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| T |
43548618 |
gacggaactgctgaatcagataaggaaagtgaagattcagattttcaaagctcttatctacagggttatcattcatattgattaatttgttggctcttaa |
43548519 |
T |
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| Q |
416 |
attgaaaatattaagtgctatgtgtaaaaaacttgtacattaatat |
461 |
Q |
| |
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| ||||||||||| || ||||||||| |||||||||||||| |||| |
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| T |
43548518 |
aatgaaaatattatgttctatgtgtagaaaacttgtacattcatat |
43548473 |
T |
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