View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_high_21 (Length: 343)
Name: NF19271_high_21
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 12 - 300
Target Start/End: Complemental strand, 10713077 - 10712790
Alignment:
| Q |
12 |
atgaatctacagagaatagaactgggttgttgtgtaatcataaatgaaaagacatataactgatgttaaaacaa-ggaacaaagatatgttaaaacaaag |
110 |
Q |
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| T |
10713077 |
atgaatctacagagaatagaactgggttgt---gtaatcataaatgaaaagacatatacctgatgttaaaacaaaggaacaaagata--------caaag |
10712989 |
T |
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| Q |
111 |
gaacatagatgttaaaacaaacttatggcagtatgcatgtctatgttgaatttcaaagcctaaatctccaagagataaaatattagatctacgttaaaa- |
209 |
Q |
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| T |
10712988 |
gaacaaagatgttaaaacaaacttatggcagcatgcatatctatgttgaatttcaaagcctaaatctccaagagacaaaatattagatctttgttaaaaa |
10712889 |
T |
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| Q |
210 |
-------agctgcggcaattgatttttggaatttgaaaccctaaatccaagagacaaattttatgtatttatagcaaa-ttagagaagcaattggtggg |
300 |
Q |
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| T |
10712888 |
aacaagcagctgcggcaattgaattttggaatttaaaaccctaaatccaagagacaaattttatgtatttatagcaaatttagagaagtagttggtggg |
10712790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 210 - 308
Target Start/End: Original strand, 10713261 - 10713359
Alignment:
| Q |
210 |
agctgcggcaattgatttttggaatttgaaaccctaaatccaagagacaaattttatgtatttatagcaaattagagaagcaattggtgggttatctgt |
308 |
Q |
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| T |
10713261 |
agctgcggcaattgatttttggaatttgaaaccctaaatccaagagataaattttatatatttatagcaaattagagaagcaattggtggtttatctgt |
10713359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 9423076 - 9423144
Alignment:
| Q |
232 |
aatttgaaaccctaaatccaagagacaaattttatgtatttatagcaaatt-agagaagcaattggtggg |
300 |
Q |
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| T |
9423076 |
aatttgaaaccctaaat-caagagacagaatttttgtatttataggaaattgagagaaacaattggtggg |
9423144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 9448644 - 9448712
Alignment:
| Q |
233 |
atttgaaaccctaaatccaa-gagacaaattttatgtatttatagcaaattagagaagcaattggtggg |
300 |
Q |
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| T |
9448644 |
atttgaaaccctaattcctatgagacacaatttatgtatttatagcaaatttaagaaagaattggtggg |
9448712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 29277818 - 29277885
Alignment:
| Q |
233 |
atttgaaaccctaaatccaagagacaaattttatgtatttatagcaaattagagaagcaattggtggg |
300 |
Q |
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| T |
29277818 |
atttgaaaccctaaatctatgaaacacaatttatgtatttatagcaaatttaagaaagaattggtggg |
29277885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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