View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_high_23 (Length: 328)
Name: NF19271_high_23
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 312
Target Start/End: Complemental strand, 3595066 - 3594772
Alignment:
| Q |
16 |
caacaaagaagatgatgatgagttggattatgaatatgaatcttgccttggttcccggcgccctaatgctcatggtggccgtggttgtcattcttccacc |
115 |
Q |
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| T |
3595066 |
caacaaagaagatgatgatgagttggattatgaatatgaatcttgccttggttcccggcgccctaatgctcatggtggccgtggttctcattcttccacc |
3594967 |
T |
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| Q |
116 |
ctccaacctctctccaatcgcaaccagaggttctctaatcgcattcgtgcttctcccttggaggttggtgagggtattcaatttgagctgttttcnnnnn |
215 |
Q |
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| T |
3594966 |
ctccaacctctctccaatcgcaaccagaggttctctaaccgcattcgtgcttctccattggaggttggtgagggtattcagtttgagctgttttc--gtg |
3594869 |
T |
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| Q |
216 |
nnnnnnnnnatggtcttgaaatgtgacttggaatttgttgtttgttgttacaggagtgggaaggaagaacaaatattgccatgtctaacactgttac |
312 |
Q |
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| T |
3594868 |
tgtgtgtgtatggtcttgaaatgtgacttggaatttattgtttgttgttacaggagtgggaaggaagaacaaatattggcatgtctaacactgttac |
3594772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 28935164 - 28935109
Alignment:
| Q |
257 |
ttgttgttacaggagtgggaaggaagaacaaatattgccatgtctaacactgttac |
312 |
Q |
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| T |
28935164 |
ttgttgttgcaggatttggaaggaagaatgaatattgccatgtctaacagtgttac |
28935109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 35713261 - 35713329
Alignment:
| Q |
103 |
tcattcttccaccctccaacctctctccaatcgcaaccagaggttctctaatcgcattcgtgcttctcc |
171 |
Q |
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| T |
35713261 |
tcattcttcaacacttcaacctctctccaatcgtaaccagaaattctcacatcatattcgtgcttctcc |
35713329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 8491229 - 8491176
Alignment:
| Q |
256 |
tttgttgttacaggagtgggaaggaagaacaaatattgccatgtctaacactgt |
309 |
Q |
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| T |
8491229 |
tttgttgttgcaggagtgggaaggaagaacaaatattgccatgtctaacactgt |
8491176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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