View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19271_high_26 (Length: 312)

Name: NF19271_high_26
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19271_high_26
NF19271_high_26
[»] chr3 (14 HSPs)
chr3 (1-312)||(2790059-2790370)
chr3 (1-312)||(2797062-2797364)
chr3 (1-312)||(2806962-2807270)
chr3 (98-312)||(5412608-5412813)
chr3 (1-312)||(2748699-2748998)
chr3 (1-206)||(2855945-2856150)
chr3 (1-221)||(2768852-2769072)
chr3 (1-312)||(2838735-2839037)
chr3 (1-221)||(2758997-2759217)
chr3 (99-148)||(2818413-2818462)
chr3 (8-76)||(5412814-5412882)
chr3 (261-312)||(2856196-2856247)
chr3 (275-312)||(2755745-2755782)
chr3 (275-312)||(2768770-2768807)
[»] scaffold0691 (1 HSPs)
scaffold0691 (1-312)||(6287-6589)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 2790370 - 2790059
Alignment:
Q  1 tttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgctgcttgatgatcctggtgtctgtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2790370 tttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgctgcttgatgatcctggtgtctgtga 2790271  T
Q  101 aatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaggctatctgatgatggggaatcaaagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  2790270 aatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgtttttaatctcagatgctatctgatgatggggaatcaaagtt 2790171  T
Q  201 ttgattaggcatgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatatctt 300  Q
    |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2790170 ttgattaggcttgcaatcttgcagaataaagattgacggcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatatctt 2790071  T
Q  301 caatgcgaaatg 312  Q
    ||||||||||||    
T  2790070 caatgcgaaatg 2790059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 2797364 - 2797062
Alignment:
Q  1 tttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgctgcttgatgatcctggtgtctgtga 100  Q
    |||||||||| |||||||||||||  |||||||||  |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2797364 tttcttcaataaaaagggaagacagtcgaggatcacaccatcttctattatccgtctctctactgctgttgttgctgcttgatgatcctggtgtctgtga 2797265  T
Q  101 aatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaggctatctgatgatggggaatcaaagtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||| ||| |||||| |||    
T  2797264 aatttgaaagttatacctctcacttctttccttgattccacgaattgatatcttaatgttcttaatctcagatgctatctggtgaagggaaatcaatgtt 2797165  T
Q  201 ttgattaggcatgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatatctt 300  Q
    |||||||| | |||||||||||||| || ||||   | |||||| | ||||| |      ||||||||||| ||| ||||||||||||| |||| |||||    
T  2797164 ttgattagacttgcaatcttgcagactaaagat---ccgcatcccggaggatag------gccctatgcatcagctgaaggtattcatcaatgacatctt 2797074  T
Q  301 caatgcgaaatg 312  Q
    ||||||||||||    
T  2797073 caatgcgaaatg 2797062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 2807270 - 2806962
Alignment:
Q  1 tttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgctgcttgatgatcctggtgtctgtga 100  Q
    |||||||||| |||||||||||||  ||||||||| ||||||||| ||| || ||||||||| ||||||||| |||   |||||||||| ||   |||||    
T  2807270 tttcttcaataaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctctagtgctgttgcggct---tgatgatccttgttcatgtga 2807174  T
Q  101 aatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaggctatctgatgatggggaatcaaagtt 200  Q
    |||||| |||||||||||||||||||||||||||||||| ||||  ||   ||||||||     |||| ||| ||||| |||||| ||||||||||||||    
T  2807173 aatttgtaagttatacctctcacttctttccttgattccgcgaaccgacaccttaatgtctcggatcttagatgctatatgatgacggggaatcaaagtt 2807074  T
Q  201 ttgattaggcatgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatatctt 300  Q
    ||||  |||| |||||||||| |||||  ||||  || |||||||| |||| ||||||||||| ||||||| |||||| |||||||||||||||||||||    
T  2807073 ttgaccaggcttgcaatcttgtagaatgaagatccaccgcatccaggaggactggattttgccatatgcatcagccgatggtattcatcgatgatatctt 2806974  T
Q  301 caatgcgaaatg 312  Q
    ||||||||||||    
T  2806973 caatgcgaaatg 2806962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 98 - 312
Target Start/End: Complemental strand, 5412813 - 5412608
Alignment:
Q  98 tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaggctatctgatgatggggaatcaaa 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| || ||||||||| ||||||||||||||||||||||||    
T  5412813 tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgacaacttaatgtcctgaatctcagatgctatctgatgatggggaatcaaa 5412714  T
Q  198 gttttgattaggcatgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatat 297  Q
    |||||||| | || |||||||||||||| || ||||   |||||||||  |||||||       |||||||||| |||||| ||||||| || |||| ||    
T  5412713 gttttgatcaagcttgcaatcttgcagactaaagat---ctgcatccaagaggattg------accctatgcattagccgatggtattcgtcaatgacat 5412623  T
Q  298 cttcaatgcgaaatg 312  Q
    |||||||||||||||    
T  5412622 cttcaatgcgaaatg 5412608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 312
Target Start/End: Complemental strand, 2748998 - 2748699
Alignment:
Q  1 tttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgctgcttgatgatcctggtgtctgtga 100  Q
    |||||||||| ||||| |||||||  ||||||||||||||| ||| ||| ||  ||||||| ||  || |  |||||||||| | |||| ||   |||||    
T  2748998 tttcttcaataaaaagagaagacagtcgaggatcatgccattttccattttc--tctctctccta-tgctaatgctgcttgaagttccttgttcgtgtga 2748902  T
Q  101 aatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaggctatctgatgatggggaatcaaagtt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| || ||| ||||| ||||| |||||| ||||||||||||||    
T  2748901 aatttgaaagttatacctctcacttctttccttgattccacgaattgataatttaatgtcctgaatttcagatgctatatgatgacggggaatcaaagtt 2748802  T
Q  201 ttgattaggcatgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatatctt 300  Q
    |||||| | | ||||||||||| || || ||||   | ||||| || |||||||      ||||||||||| ||||||||||||||||| |||| |||||    
T  2748801 ttgatttgccttgcaatcttgccgactaaagat---ccgcatctaggaggattg------gccctatgcattagccgaaggtattcatcaatgacatctt 2748711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 2855945 - 2856150
Alignment:
Q  1 tttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgctgcttgatgatcctggtgtctgtga 100  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||| ||| || ||||||| ||||| ||| ||   |||||| |||||| |    |||||    
T  2855945 tttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctgtctctccactgcggtttctttggcttgaggatccttgctcgtgtga 2856044  T
Q  101 aatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaggctatctgatgatggggaatcaaagtt 200  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||   ||| |||| || |||||| || || || | |||||||||||||||||||    
T  2856045 aatttgaaagttatacctctggcttctttccttgattccacgaattgacaacttgatgtcctgaatctctgatgcaattttatgatggggaatcaaagtt 2856144  T
Q  201 ttgatt 206  Q
    ||||||    
T  2856145 ttgatt 2856150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2769072 - 2768852
Alignment:
Q  1 tttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgctgcttgatgatcctggtgtctgtga 100  Q
    |||||||||| || |||||||||| |||||||||| ||||||||| | | || | ||||| ||| ||||| |||||| |||| |||||| ||   |||||    
T  2769072 tttcttcaataaagagggaagacatccgaggatcacgccatcttccactttctgactctccactactgttcctgctgtttgaggatccttgttcatgtga 2768973  T
Q  101 aatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaggctatctgatgatggggaatcaaagtt 200  Q
    | |||||||| |||||||||| ||||||||||||||||||||||||||   |||||||| || ||||||  | || || | |||| ||||| ||||||||    
T  2768972 agtttgaaagctatacctctcgcttctttccttgattccacgaattgacaacttaatgtcctgaatctctaatgcaattttatgacggggagtcaaagtt 2768873  T
Q  201 ttgattaggcatgcaatcttg 221  Q
    |||||||||| ||||||||||    
T  2768872 ttgattaggcttgcaatcttg 2768852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 2838735 - 2839037
Alignment:
Q  1 tttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctcta---ctgctgttgctgctgcttgatgatcctggtgtctg 97  Q
    ||||||||||||||||||||||||  ||||| || |||||||||| ||| || | ||||| |   |||||||||||||||||||| |||||| ||   |     
T  2838735 tttcttcaatgaaaagggaagacagtcgagggtcgtgccatcttccattttctgcctctccaggactgctgttgctgctgcttgaggatccttgttcatt 2838834  T
Q  98 tgaaatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaggctatctgatgatggggaatcaaa 197  Q
    |||||||||||||||||||||||| ||||||| |||||||||  || |||    ||| ||||  | |||||| || || || |  ||| |||||||||||    
T  2838835 tgaaatttgaaagttatacctctcgcttcttttcttgattccgtgagttgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaa 2838934  T
Q  198 gttttgattaggcatgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatat 297  Q
    ||||||||||  | || | || |||   ||| ||||   |||||||||| |||||||      ||||||||||| || |||||||||||||| |||| ||    
T  2838935 gttttgattaaccttggagtcatgc---ataaagat---ctgcatccaggaggattg------gccctatgcattagtcgaaggtattcatcaatgacat 2839022  T
Q  298 cttcaatgcgaaatg 312  Q
    |||||||||||||||    
T  2839023 cttcaatgcgaaatg 2839037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 2759217 - 2758997
Alignment:
Q  1 tttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgctgcttgatgatcctggtgtctgtga 100  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||| ||| ||  |||||    |  ||||||||||| |||| |||||| ||   | |||    
T  2759217 tttcttcaatgaaaagggaagacagtcgaggatcacgccatcttccattttctttctcttcggtagtgttgctgctgtttgaggatccttgttcatttga 2759118  T
Q  101 aatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaggctatctgatgatggggaatcaaagtt 200  Q
    ||||||||||||||||||| | |||||||||||||||||  ||||||    ||| ||||  | |||||| || || || |  ||| ||||||||||||||    
T  2759117 aatttgaaagttatacctcacgcttctttccttgattccgtgaattgtcagcttgatgtcttgaatctctgatgcaattttgtgacggggaatcaaagtt 2759018  T
Q  201 ttgattaggcatgcaatcttg 221  Q
    |||||| ||| || |||||||    
T  2759017 ttgattgggcttgtaatcttg 2758997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 2818462 - 2818413
Alignment:
Q  99 gaaatttgaaagttatacctctcacttctttccttgattccacgaattga 148  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  2818462 gaaatttggaagttatacctctcgcttctttccttgattccacgaattga 2818413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 76
Target Start/End: Complemental strand, 5412882 - 5412814
Alignment:
Q  8 aatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgct 76  Q
    |||||| ||||||||||  ||||||||  ||||||||| ||| || |||||||||||||||||||||||    
T  5412882 aatgaatagggaagacagtcgaggatctcgccatcttccattttctgtctctctactgctgttgctgct 5412814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 312
Target Start/End: Original strand, 2856196 - 2856247
Alignment:
Q  261 gccctatgcatgagccgaaggtattcatcgatgatatcttcaatgcgaaatg 312  Q
    |||||||| || | ||||||||||||||| |||| |||||||||||||||||    
T  2856196 gccctatgtatcaaccgaaggtattcatcaatgacatcttcaatgcgaaatg 2856247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 2755782 - 2755745
Alignment:
Q  275 ccgaaggtattcatcgatgatatcttcaatgcgaaatg 312  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  2755782 ccgaaggtattcatcaatgacatcttcaatgcgaaatg 2755745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 2768807 - 2768770
Alignment:
Q  275 ccgaaggtattcatcgatgatatcttcaatgcgaaatg 312  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  2768807 ccgaaggtattcatcaatgacatcttcaatgcgaaatg 2768770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 6287 - 6589
Alignment:
Q  1 tttcttcaatgaaaagggaagacaaccgaggatcatgccatcttctattgtccgtctctctactgctgttgctgctgcttgatgatcctggtgtctgtga 100  Q
    |||||||||| ||||||| ||| || ||||||||| ||||||||| ||| || | |||||   ||||| |||||   ||||||||||| |||   ||| |    
T  6287 tttcttcaataaaaagggcagataatcgaggatcacgccatcttccattttctgcctctcctgtgctgctgctgacacttgatgatccaggttcatgtaa 6386  T
Q  101 aatttgaaagttatacctctcacttctttccttgattccacgaattgatgtcttaatgttcttaatctcagaggctatctgatgatggggaatcaaagtt 200  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||   ||| |||| || ||||||||| ||||||||||| || | ||||||||||    
T  6387 aatttgaaagttatacctttcacttctgtccttgattccacgaattgacagctttatgtcctgaatctcagatgctatctgatgctgagaaatcaaagtt 6486  T
Q  201 ttgattaggcatgcaatcttgcagaatagagattgactgcatccagaaggattggattttgccctatgcatgagccgaaggtattcatcgatgatatctt 300  Q
    |||||||||| | |||||||||||| ||  |||   | |||||||| ||| |||      |||||||| || ||||||||||||||||| || | |||||    
T  6487 ttgattaggcttacaatcttgcagactaatgat---ccgcatccaggagggttg------gccctatggatcagccgaaggtattcatcaataacatctt 6577  T
Q  301 caatgcgaaatg 312  Q
    ||||||||||||    
T  6578 caatgcgaaatg 6589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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