View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_high_36 (Length: 289)
Name: NF19271_high_36
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 51405024 - 51404754
Alignment:
| Q |
1 |
ttatggaatggaaggagtattatcgaggcacgcttttgatgagcactagtacaaatatcttcatggatgttgctgagagcagaaatggctgtcatgggac |
100 |
Q |
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| T |
51405024 |
ttatggaatggaaggagtattatcgaggcacgcttttgatgagcactagtacaaatatcttcatggatgttgctgagagcagaaatggctgtcatgggac |
51404925 |
T |
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| Q |
101 |
gaacattgacactgttcaattttccataggtttggaaagcgataaccatttgatcttcatcattttgctttttgttccaaaagggcattccattgttacg |
200 |
Q |
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| T |
51404924 |
gaacattgacactgttcaattttccataggtttggaaagcgataaccatttgatcttcatcattttgttttttgttccaaaagggcattccattgttacg |
51404825 |
T |
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| Q |
201 |
tgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattgcatagatacaga |
271 |
Q |
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| T |
51404824 |
tgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattgcatagatacaga |
51404754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 31 - 269
Target Start/End: Original strand, 29981704 - 29981945
Alignment:
| Q |
31 |
cgcttttgatgagcactagtacaaatatcttcatggatgttgctgagagcagaaatggctgtcatgggacgaacattgacactgttcaattttccatagg |
130 |
Q |
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| T |
29981704 |
cgcttttggtgtgcacttgaacaaatgtcttcatgaatgttattgagagatgaaattgctgtcatactacgaacattgacactacttaaatgtccataag |
29981803 |
T |
|
| Q |
131 |
tttggaaagcgataaccatttgatcttcat---cattttgctttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctga |
227 |
Q |
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| T |
29981804 |
cttgaaatgcaattaccatttggtctttgttgtcatgttgttttttgttccaaaaaggcaagccattatttcttgccttatgaaccattgttatggctga |
29981903 |
T |
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| Q |
228 |
agatctttctgagagttccatcaagtgcattgcatagataca |
269 |
Q |
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| T |
29981904 |
aggtctttctgagagttccattaagtgcattgcatatataca |
29981945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 269
Target Start/End: Complemental strand, 8156274 - 8156085
Alignment:
| Q |
82 |
gaaatggctgtcatgggacgaacattgacactgttcaattttccataggtttggaaagcgataaccatttgatcttcat---cattttgctttttgttcc |
178 |
Q |
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| T |
8156274 |
gaaattgctgtcataggacgaacattgacactacttaaatgtccataagcttgaaatgcaattaccatttggtctttgttgtcatgttgttttttgttcc |
8156175 |
T |
|
| Q |
179 |
aaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattgcatagataca |
269 |
Q |
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| T |
8156174 |
aaa-gggcatgccattatttcttgccttatgaaccattcttatggctgaaggtctttctgagagttccattaagtgcattgcatatataca |
8156085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 36613530 - 36613639
Alignment:
| Q |
160 |
tcattttgctttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattg |
259 |
Q |
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|||| ||| |||||||||||||||||||| ||||| || | ||| || |||||||| | || ||||||| |||||||||||||||||| |||||||||| |
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| T |
36613530 |
tcatgttgttttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttccattaagtgcattg |
36613629 |
T |
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| Q |
260 |
catagataca |
269 |
Q |
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| T |
36613630 |
catatataca |
36613639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 7674915 - 7674806
Alignment:
| Q |
160 |
tcattttgctttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattg |
259 |
Q |
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|||| ||| |||||||||||||||||||| ||||| || | ||| || |||||||| | || ||||||| ||||||| |||||||||| |||||||||| |
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| T |
7674915 |
tcatgttgttttttgttccaaaagggcatgccattatttcttgccttatgaaccattgttatggctgaaggtctttctcagagttccattaagtgcattg |
7674816 |
T |
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| Q |
260 |
catagataca |
269 |
Q |
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| T |
7674815 |
catatataca |
7674806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 25523753 - 25523862
Alignment:
| Q |
160 |
tcattttgctttttgttccaaaagggcattccattgttacgtgctttgtgaaccatggagatagctgaagatctttctgagagttccatcaagtgcattg |
259 |
Q |
| |
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|||| ||| |||||||||||||||||||| ||| | || | ||| || |||||||| | || ||||||| ||||||||||||||| || |||||||||| |
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| T |
25523753 |
tcatgttgttttttgttccaaaagggcatgccaatatttcttgccttatgaaccattgttatggctgaaggtctttctgagagttctattaagtgcattg |
25523852 |
T |
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| Q |
260 |
catagataca |
269 |
Q |
| |
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|||| ||||| |
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| T |
25523853 |
catatataca |
25523862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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