View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_high_37 (Length: 288)
Name: NF19271_high_37
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_37 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 280
Target Start/End: Complemental strand, 10982874 - 10982613
Alignment:
| Q |
18 |
ccaacaaaacccatatcatataaaaaagttatattatgttacttctaattctgcttccacaacttagccaacttattcaaagcgacaagggaacttccac |
117 |
Q |
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| T |
10982874 |
ccaacaaaacccatatcatataaaaa-gttatattatgttacttctaattctgcttccacaactgagccaacttattcaaagcgacaagggaacttccac |
10982776 |
T |
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| Q |
118 |
cttcttctcttgtctctttagcacttattttcatcttgaaaataatttgtctaatctctttccctttatcggagtccattaattccttaattcgatcccc |
217 |
Q |
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| T |
10982775 |
cttcttctcttgcctctttagcacttattttcatcttgaaaataatttgtctaatctctttccccttatcggagtccattaattccttaatttgatcccc |
10982676 |
T |
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| Q |
218 |
taactcggttccactcacaaacccgtcttttgaatccttcagttccaaagcaaccttcatctc |
280 |
Q |
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| T |
10982675 |
taactcggttccactcacaaacccgtcttttgaatccttcaattccaaagcaaccttcatctc |
10982613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 66 - 280
Target Start/End: Complemental strand, 10968877 - 10968663
Alignment:
| Q |
66 |
ttctgcttccacaacttagccaacttattcaaagcgacaagggaacttccaccttcttctcttgtctctttagcacttattttcatcttgaaaataattt |
165 |
Q |
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| T |
10968877 |
ttctgcttccacaactgtgccagattattcaaagcaacaagtgaacttccaccttcttctcttgcctctttagcacttattttcatcttgaaaataattt |
10968778 |
T |
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| Q |
166 |
gtctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaa |
265 |
Q |
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| T |
10968777 |
tcctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaa |
10968678 |
T |
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| Q |
266 |
agcaaccttcatctc |
280 |
Q |
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| T |
10968677 |
agcaaccttcatctc |
10968663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 113 - 277
Target Start/End: Complemental strand, 11003010 - 11002846
Alignment:
| Q |
113 |
tccaccttcttctcttgtctctttagcacttattttcatcttgaaaataatttgtctaatctctttccctttatcggagtccattaattccttaattcga |
212 |
Q |
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||||||| || || ||| ||| ||||||||| |||||||||| ||||| | | |||||||||||||||||| || || ||||| || ||||||| || |
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| T |
11003010 |
tccacctcctccttttgcctccttagcacttgttttcatcttcaaaattgtctctctaatctctttccctttttctgattccatcaactccttaactctc |
11002911 |
T |
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| Q |
213 |
tcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaaagcaaccttcat |
277 |
Q |
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| T |
11002910 |
tcccccaactcatttccactcacaaaccctttttttgacccatttagttccaaagccaccttcat |
11002846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 87 - 268
Target Start/End: Complemental strand, 11080177 - 11079996
Alignment:
| Q |
87 |
aacttattcaaagcgacaagggaacttccaccttcttctcttgtctctttagcacttattttcatcttgaaaataatttgtctaatctctttccctttat |
186 |
Q |
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||||| |||||| | ||||| ||| ||||||| || |||||| || |||||||||||||||||||| ||||| | | ||||| ||||||||| || | |
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| T |
11080177 |
aactttttcaaatcaacaagagaagatccacctcctcctcttgcttccttagcacttattttcatcttcaaaattgtctctctaacctctttcccctttt |
11080078 |
T |
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| Q |
187 |
cggagtccattaattccttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaaagc |
268 |
Q |
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| T |
11080077 |
ctgattccatcaactccttaactctctcccccaactcattttcactcacaaacccatcttttgactcattcaattccaaagc |
11079996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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