View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_high_4 (Length: 568)
Name: NF19271_high_4
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 15 - 559
Target Start/End: Complemental strand, 43260351 - 43259785
Alignment:
| Q |
15 |
actcaataatgcagaatatagtaatagaatacacttttgtttttattcattctatttatgactgtgaaaattaaaataacggattcacatgtgcttgtgc |
114 |
Q |
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| T |
43260351 |
actcaataatgcagaatatagtaatagaatacacttttgtttttattcattctatttatgactgtgaaaattaaaataacggattcacatgtgcttgtgc |
43260252 |
T |
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| Q |
115 |
acctctttcatgactggttgttgtgttgtcatgtaggttccatacttccatgattctttttccttcccgcacacatttccctccatctcaaactaaatgc |
214 |
Q |
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| T |
43260251 |
acctctttcatgactggttgttgtgttgtcatgtaggttccatacttccatgattccttttccttcccgcacacatttccctccatctcaaactaaatgc |
43260152 |
T |
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| Q |
215 |
cacatttatagtaagtgatgtgtatgatattaattagatgatataattggaat-nnnnnnnnnntcattgaaaactagaaacaacatttatttttggaca |
313 |
Q |
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| T |
43260151 |
cacatttatagtaagtgatgtgtatgatattaattagatgatataattggaataaaataaaaaatcattgaaaactagaaacaacatttatttttggaca |
43260052 |
T |
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| Q |
314 |
aattattttatctaaagag-------------------tagcgcaagattgtatctatttaatcttgacattttgtaatgaatgaactttaatcttacga |
394 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||| |
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| T |
43260051 |
aattattttatctaaagagtagatacaacatttaattatagcgcaagattgtatctatttaatcttgatattttgcaatgagtgaactttaatcttacga |
43259952 |
T |
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| Q |
395 |
tctttaagaagccattgccttcgtaaatctgtcaaattggaattgtgagttgaaacatatttattaggaggataatttatgcgatcttcttgcaaactta |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43259951 |
tctttaagaagccattgccttcgtaaatctgtcaaattggaattgtgagttgaaacatatttattaggaggataatctatgcgatcttcttgcaaactta |
43259852 |
T |
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| Q |
495 |
ggtcgtagtggatgagatattgaattattacaa--ttcactttcgtaaattttacttcttgatgatg |
559 |
Q |
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| T |
43259851 |
ggtcgtagtggatgagatattgaattattacaattttcactttcgtaaattttacttcttgatgatg |
43259785 |
T |
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