View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_high_41 (Length: 269)
Name: NF19271_high_41
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 40597873 - 40597629
Alignment:
| Q |
1 |
agagggtattcaaatttctagagtagaggaaggttcgcaaaaattataagagaaattattaaaagtgatctagagatatgatattcaatataacactgcc |
100 |
Q |
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| T |
40597873 |
agagggtgttcaaatttttagagtagaggaaggtccgcaaaaattataagagaaattattaaaagtgatttagagatatgatattcaatataacactgcc |
40597774 |
T |
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| Q |
101 |
gtcatttaatccatgcaggagtgggagtgatggaaaataatgtatcgatggtccccatacgagtgtggataaataaatttagaggttgaaattacttgta |
200 |
Q |
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| T |
40597773 |
gtcatttaatccatgcaggagtgagagtgatggaaaataatgtattgatggtccccatatgagtgtggataaataaatttagaggttgaatttacttgta |
40597674 |
T |
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| Q |
201 |
tgtgtatcattcaccgcatgcctcccttttgcatggccattagaa |
245 |
Q |
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| T |
40597673 |
tatgtatcattcaccgcatgcctcccttttgcatggccattagaa |
40597629 |
T |
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Back To:
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 41779249 - 41779211
Alignment:
| Q |
39 |
aaaaattataagagaaattattaaaagtgatctagagat |
77 |
Q |
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|||||||||||||||||||||||||| ||||||||||| |
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| T |
41779249 |
aaaaattataagagaaattattaaaaaagatctagagat |
41779211 |
T |
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