View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_high_44 (Length: 257)
Name: NF19271_high_44
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_44 |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 21198205 - 21197974
Alignment:
| Q |
8 |
gagcacagaggaaacgagaagggacagtcgaggtctaagtctaaatccaagtgtttgataaattgaaatatggatgtttcatttgtcataaatatcctgg |
107 |
Q |
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| T |
21198205 |
gagcatagaggaaacgagaaggggaagtcaaggtctaagtctaaatccaagtgtttgataaatcgaaatatcgatgtttcatttgtcataaatatcctgg |
21198106 |
T |
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| Q |
108 |
actagttgaaaggactgatactcctttgaacaagcatctttaatcagtttgatagtaattaaggagtatgattctacttgagtgagactatgtcctcttt |
207 |
Q |
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| T |
21198105 |
act----gaaaggactgatactcctttggacaagcatctttaatcagtttgatagtaattaaggagtatgattctacttgagtgagactatgtcctcttt |
21198010 |
T |
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| Q |
208 |
gacacgccggatttaagcctttgaaatcaccttcct |
243 |
Q |
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| T |
21198009 |
gacacgccggatttaagcctttgaaatcaccttcct |
21197974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 21304050 - 21303989
Alignment:
| Q |
96 |
taaatatcctggactagttgaaaggactgatactcctttgaacaagcatctttaatcagttt |
157 |
Q |
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| T |
21304050 |
taaatatcttggacgagttgaaagaactgatactcctttggacagccatctttaatcagttt |
21303989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 33715516 - 33715455
Alignment:
| Q |
98 |
aatatcctggactagttgaaaggactgatactcctttgaacaagcatctttaatcagtttga |
159 |
Q |
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| T |
33715516 |
aatatcctggacgagttgaaaggactagtgctcctttggataaccatctttaatcagtttga |
33715455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 21183564 - 21183481
Alignment:
| Q |
98 |
aatatcctggactagttgaaaggactgatactcctttgaacaagcatctttaatcagtttgatagtaattaaggagtatgattc |
181 |
Q |
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| T |
21183564 |
aatatcctcgacgagttgaaaagactggtgctcctttgtgcaaccatctttaatcggtttgatagcaactgaggagtctgattc |
21183481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 34841719 - 34841653
Alignment:
| Q |
33 |
agtcgaggtctaagtctaaatccaagtg-tttgataaattgaaatatggatgtttcatttgtcataa |
98 |
Q |
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| T |
34841719 |
agtcgaggtctaagtctaagtccaagggatttgtttaattgaaatatcgatgtttcatttgtcataa |
34841653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 21549688 - 21549725
Alignment:
| Q |
60 |
gtttgataaattgaaatatggatgtttcatttgtcata |
97 |
Q |
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| T |
21549688 |
gtttgataaatcgaaatattgatgtttcatttgtcata |
21549725 |
T |
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