View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19271_high_50 (Length: 250)
Name: NF19271_high_50
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_50 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 20048010 - 20047807
Alignment:
| Q |
11 |
gatgaatgcaatttcatttcttaacgtactcttgtttaactattttagcctaaaaatttctaatgtcaaa--gatatccacaaagatttgtttagttttt |
108 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
20048010 |
gatgaatgcaatttcatttcttaatgtactcttgtttaactattttagcctaaaaatttctaatttcaaaaagatatccacaaagatttgtttagttttt |
20047911 |
T |
|
| Q |
109 |
atccaacaataacctttgaatgcacaagttatttgttagtgccaatgagaaatatgttcctaagaatattttaatcaagagatcaagttatactctagat |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20047910 |
atccaacaataacctttgaatgcacaagttatttgttagtgccaatgagaaatatgttcctaagaatattttaatcaagagataaagttatactctagat |
20047811 |
T |
|
| Q |
209 |
tatg |
212 |
Q |
| |
|
|||| |
|
|
| T |
20047810 |
tatg |
20047807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 48 - 250
Target Start/End: Original strand, 19904520 - 19904730
Alignment:
| Q |
48 |
aactattttagcctaaaaatttctaatgtcaaa-gata---tccacaaagatttgtttagtttttatccaacaataacctttgaatgcacaagttatttg |
143 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19904520 |
aactattttagcctaaaaatttctggtgtcaaaagatacaatccacaaagatttggttagtttttatccaacaataacctttgaatgcacaagttatttg |
19904619 |
T |
|
| Q |
144 |
ttagtgccaatgagaaatatgttcctaagaatattttaatcaagagatcaagt----tatactctagattatgctcttcatatgacaaaatcaatatctt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
19904620 |
ttagtgccaatgagaaatatgttcctaagaatattttaatcaagagatcaagttatatatactctagattatgctcttcatataacaaaatcaatatcat |
19904719 |
T |
|
| Q |
240 |
aaatgaattca |
250 |
Q |
| |
|
||||||||||| |
|
|
| T |
19904720 |
aaatgaattca |
19904730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 239
Target Start/End: Original strand, 20014147 - 20014229
Alignment:
| Q |
158 |
aaatatgttcctaagaatattttaatcaagaga-tcaagttatactctagattatgctcttcatatgacaaaatcaatatctt |
239 |
Q |
| |
|
||||||| |||||| | ||||||| |||| ||| | |||| |||||||| | |||||| ||||||| |||||||||||||||| |
|
|
| T |
20014147 |
aaatatgctcctaaaattattttagtcaacagaataaagtgatactctaaactatgcttttcatataacaaaatcaatatctt |
20014229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 26649249 - 26649205
Alignment:
| Q |
193 |
aagttatactctagattatgctcttcatatgacaaaatcaatatc |
237 |
Q |
| |
|
|||| |||||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
26649249 |
aagtgatactccagattatgctcttcatataacaaaatcgatatc |
26649205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 9817151 - 9817095
Alignment:
| Q |
180 |
taatcaagagatcaagttatactctagattatgctcttcatatgacaaaatcaatat |
236 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
9817151 |
taatcaacagatcaagtgatactctagattaagctcttcatatctcaaaatcaatat |
9817095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Original strand, 26352860 - 26352906
Alignment:
| Q |
193 |
aagttatactctagattatgctcttcatatgacaaaatcaatatctt |
239 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
26352860 |
aagtgatactctagattatgctcttcgaataacaaaatcaatatctt |
26352906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 25999383 - 25999435
Alignment:
| Q |
188 |
agatcaagttatactctagattatgctcttcatatgacaaaatcaatatctta |
240 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
25999383 |
agatcaagtcatactctagattaggctcttcacaggacaaaatcaatatctta |
25999435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 250
Target Start/End: Complemental strand, 1719258 - 1719201
Alignment:
| Q |
193 |
aagttatactctagattatgctcttcatatgacaaaatcaatatcttaaatgaattca |
250 |
Q |
| |
|
|||| ||||||| ||||| |||||||||| |||||||||||||||| ||||| |||| |
|
|
| T |
1719258 |
aagtgatactctcgattacactcttcatataacaaaatcaatatcttcaatgacttca |
1719201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University