View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_high_52 (Length: 242)
Name: NF19271_high_52
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 3161467 - 3161244
Alignment:
| Q |
1 |
cattcatccttattatgagcatgaattttgtttttgctacaagtcatttcgaggttggttagttcattagaaaactctcgtcccattttgttttctgatt |
100 |
Q |
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| T |
3161467 |
cattcatccttcttataagcatccttttt-tttttgctacaagccatttcgaggttggttagttcattagaaaactctcttcccattttgttatctgatt |
3161369 |
T |
|
| Q |
101 |
caagtttcaacttcaagcactcaggtattccattgaaagcataaagagaagctgagaatttcctctcatatttcattctcttcatagcatttcttagcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3161368 |
caagtttcaacttcaagcactcaggtattccattgaaagcataaagagaagctgagaatttcctctcatatttcattctcttcatagcatttcttagcat |
3161269 |
T |
|
| Q |
201 |
tgaagactcatcactatcatcattg |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
3161268 |
tgaagactcatcactatcatcattg |
3161244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 4039573 - 4039447
Alignment:
| Q |
88 |
ttgttttctgattcaagtttcaacttcaagcactcaggtattccattgaaagcataaagagaagctgagaatttcctctcatatttcattctcttcatag |
187 |
Q |
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|||||| | |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
4039573 |
ttgtttccagattcaagtttcaatttcaagcattcaggtattccattgaatgcataaagagaagctgaaaattttctctcatatttcattctcttcataa |
4039474 |
T |
|
| Q |
188 |
catttcttagcattgaagactcatcac |
214 |
Q |
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|| ||| | |||||||| |||||||| |
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| T |
4039473 |
cagctctaatcattgaaggctcatcac |
4039447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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