View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_high_53 (Length: 240)
Name: NF19271_high_53
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_53 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 41015245 - 41015467
Alignment:
| Q |
1 |
aacaatccttcatgcccattaaatgtggcttttcatttttcaagactctttgcgccgattctgcctatgaatatgaagagtctctaaattgctaatcaat |
100 |
Q |
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| T |
41015245 |
aacaatccttcatgcccattaaatgtggcttttcatttttcaagaatctttgcgctgattctgcctatgaatatgaagagtctctgaattggtaatcaat |
41015344 |
T |
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| Q |
101 |
gtttctaatttttcaatataacagttaccaatggaatgcacaatatgattgtataaatatgaatcacctttctgatttcccatcacttccaatctctccc |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41015345 |
gtttctaatttttcaatgtaacagttaccaatggaatgcacaatatgattgtataaatatgaatcacctttctgatttcccatcacttccaatctctccc |
41015444 |
T |
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| Q |
201 |
attctgtcatggcacacaataac |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
41015445 |
attctgtcatggcacacaataac |
41015467 |
T |
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Back To:
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 162
Target Start/End: Original strand, 34575809 - 34575906
Alignment:
| Q |
67 |
atgaatatgaagagtctctaaattgctaatcaat--gtttctaatttttcaatataacagttaccaatggaatgcacaatatgattgtataaatatga |
162 |
Q |
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|||| ||||||||||||||| ||| |||||||| ||||| || ||| |||| |||||||||||| | |||||| |||||||||||||||||||| |
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| T |
34575809 |
atgactatgaagagtctctacgttggtaatcaatatgtttccaactttccaatgtaacagttaccatttccatgcaccatatgattgtataaatatga |
34575906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 17831053 - 17831116
Alignment:
| Q |
67 |
atgaatatgaagagtctctaaattgctaatcaatgtttctaatttttcaatataacagttacca |
130 |
Q |
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|||| ||||||||||||||| |||||||||||||||||| | ||| |||| ||||||||||| |
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| T |
17831053 |
atgactatgaagagtctctacattgctaatcaatgtttcctactttccaatgaaacagttacca |
17831116 |
T |
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