View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_high_54 (Length: 239)
Name: NF19271_high_54
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_54 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 43540175 - 43539946
Alignment:
| Q |
19 |
tggagtgcatccaaatcctgtagttttcaactcccttatcaaaggatatttagacattacagacacagatggagtagaggaggtaagttctggtatttga |
118 |
Q |
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| T |
43540175 |
tggagtgcatccaaatcctgtagttttcaactcccttatcaaaggatatttagacattacagacacagatggagtagaggaggtaagttctggtatttga |
43540076 |
T |
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| Q |
119 |
tacaatgcatatttgtcggtcaacatccatttgatataatgacgtattcatgggcacctttgtttgtannnnnnncca---------gaaggtattatgt |
209 |
Q |
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| T |
43540075 |
tagtatgcatatttgtcagtcaacatccatttgatataatgacatattcatgggcacctttgtttgtatttttttccaacaggttttgaaggtattatgt |
43539976 |
T |
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| Q |
210 |
gtttgaagtgtccctacctaaatttgtgtt |
239 |
Q |
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| T |
43539975 |
gtttgatgtgtccctacctaaatttgtgtt |
43539946 |
T |
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