View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19271_high_6 (Length: 561)
Name: NF19271_high_6
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 16 - 176
Target Start/End: Original strand, 42301088 - 42301251
Alignment:
| Q |
16 |
atcaaatatgaaaacactggataagccattaaaagaaaggattatgttat---tactgaggtaatctgatttatatgtcaaatttgaattcagcatagca |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42301088 |
atcaaatatgaaaacaccggataagccattaaaagaaaagattatgttattattactgaggtaatctgatttatatgtcaaatttgaattcaacatagca |
42301187 |
T |
|
| Q |
113 |
aactcaaggtcttcgcttaacaacgaggttcctccttcaaccaaatttatcaacaaaacaacta |
176 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42301188 |
aactcaaggtcttcgcttaacaacaaggttcctccttcaaccaaatttatcaacaaaacaacta |
42301251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 42295269 - 42295437
Alignment:
| Q |
16 |
atcaaatatgaaaacactggataagccattaaaagaaaggattatgttattactgaggtaatctgatttatatgtcaaatttgaattcagcatagcaaac |
115 |
Q |
| |
|
|||| |||||||||||| ||||| |||||| | ||||| |||||||||||||||||||||||| |||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
42295269 |
atcatatatgaaaacaccggatatgccattgacagaaaagattatgttattactgaggtaatcggatttatatgtcaattttgaattcaacataacaaac |
42295368 |
T |
|
| Q |
116 |
tcaaggtcttcgcttaacaacgaggttcctccttcaaccaaatttatcaacaaaacaactactgcagaca |
185 |
Q |
| |
|
||||||| ||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42295369 |
tcaaggttttcccttaacaacaaggttcct-cttcaaccaaatttatcaacaaaacaactactgcagaca |
42295437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 397 - 532
Target Start/End: Original strand, 42295730 - 42295864
Alignment:
| Q |
397 |
agttctggttgcaagtacttgatatctctaatttccgatcccaaactcacttgatctttttatggatttaacgtatttgggatcggagattagagaattc |
496 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||| | ||| |||||| | ||||||||||||||| |
|
|
| T |
42295730 |
agttctagttgcaagta-ttgatatctctaatttctgatcccaaactcacttgatcttttcatggattaagtgtaattgggaacagagattagagaattc |
42295828 |
T |
|
| Q |
497 |
aaggacttgtagaggcaccgaagctgcaattggatc |
532 |
Q |
| |
|
||||||| | ||||||||| ||| |||||||||||| |
|
|
| T |
42295829 |
aaggactagcagaggcacccaaggtgcaattggatc |
42295864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 42295476 - 42295543
Alignment:
| Q |
228 |
acatcaacatgtaatgataatataaacttctatgcttaacaat-atacaattcattttcaacttggat |
294 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
42295476 |
acatcaacatctaatgataatataaacttctatgcttaacaataatacaattcatcttcaacttggat |
42295543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 525
Target Start/End: Complemental strand, 20305184 - 20305130
Alignment:
| Q |
471 |
atttgggatcggagattagagaattcaaggacttgtagaggcaccgaagctgcaa |
525 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| | || |||||||| ||||| |
|
|
| T |
20305184 |
atttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaa |
20305130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 525
Target Start/End: Complemental strand, 20309588 - 20309534
Alignment:
| Q |
471 |
atttgggatcggagattagagaattcaaggacttgtagaggcaccgaagctgcaa |
525 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| | || |||||||| ||||| |
|
|
| T |
20309588 |
atttgggatcggtgattagagaattgaaggacttggaaagacaccgaagttgcaa |
20309534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University