View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_high_60 (Length: 216)
Name: NF19271_high_60
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_high_60 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 8674049 - 8674239
Alignment:
| Q |
17 |
aataatatggggttaatagatgtttttcgcccttgccatttgaccgagttttgatttacccc-catttcactcaattaaggcaagcaaacaagcttctta |
115 |
Q |
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| T |
8674049 |
aataatatggggttagtagatgtttttcgcccttgcaatttgaccgagttttgatttacccctcatttcactcaattaaggcaagtaaacaagcttctta |
8674148 |
T |
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| Q |
116 |
aattgggattttactcctaataatttcttggtatctcatggaagtggacaatctttttctatggatttacttaatctctagtataatctac |
206 |
Q |
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| T |
8674149 |
aattgggattttactcctaataatttcttggtatctcatggaagtggacaatctttttctatggatttacttaatctctattataatctac |
8674239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 80 - 204
Target Start/End: Complemental strand, 8688383 - 8688260
Alignment:
| Q |
80 |
atttcactcaattaaggcaagcaaacaagcttcttaaattgggattttactcctaataatttcttggtatctcatggaagtggacaatctttttctatgg |
179 |
Q |
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| T |
8688383 |
atttcagtaaattaaggcaagcaaacaagtttcttaaactgggatttcattcctaataatttattggtatctcatagaggtggacaatc-ttttctatgg |
8688285 |
T |
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| Q |
180 |
atttacttaatctctagtataatct |
204 |
Q |
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| T |
8688284 |
atttacttaatctctattataatct |
8688260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 8692344 - 8692417
Alignment:
| Q |
78 |
ccatttcactcaattaaggcaagcaaacaagcttcttaaatt-gggattttactcctaataatttcttggtatctcat |
154 |
Q |
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| T |
8692344 |
ccatttcactcaattaacgcaa----acaagcttcttatatttgggattttactcctaatactttcttggcatctcat |
8692417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 8688264 - 8688224
Alignment:
| Q |
165 |
aatctttttctatggatttacttaatctctagtataatctac |
206 |
Q |
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| T |
8688264 |
aatcttttt-tatggatttacttaatctctattataatctac |
8688224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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