View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19271_low_10 (Length: 463)

Name: NF19271_low_10
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19271_low_10
NF19271_low_10
[»] chr1 (8 HSPs)
chr1 (25-160)||(33884501-33884636)
chr1 (25-160)||(33959616-33959751)
chr1 (252-333)||(33884273-33884354)
chr1 (252-333)||(33959898-33959979)
chr1 (377-453)||(33883957-33884036)
chr1 (377-453)||(33960218-33960297)
chr1 (329-361)||(33884052-33884084)
chr1 (329-361)||(33960168-33960200)
[»] chr7 (2 HSPs)
chr7 (26-76)||(45560273-45560323)
chr7 (34-73)||(3347014-3347053)
[»] chr3 (1 HSPs)
chr3 (37-74)||(40699690-40699727)
[»] chr8 (1 HSPs)
chr8 (26-66)||(27924380-27924420)


Alignment Details
Target: chr1 (Bit Score: 124; Significance: 1e-63; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 25 - 160
Target Start/End: Complemental strand, 33884636 - 33884501
Alignment:
Q  25 cagttattcgtgtaactaatcccaaattcaattttaattcatatcactttttattgagagtattttaatctcaatttctgaattagcaaaagtgatatga 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33884636 cagttattcgtgtaactaatcccaaattcaattttaattcatatcactttttattgagagtattttaatctcaatttctgaattagcataagtgatatga 33884537  T
Q  125 aagtagaaaacgagagaagaacagaggaagatggtg 160  Q
    | |||| |||||||||||||||||||||||||||||    
T  33884536 acgtaggaaacgagagaagaacagaggaagatggtg 33884501  T

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Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 33959616 - 33959751
Alignment:
Q  25 cagttattcgtgtaactaatcccaaattcaattttaattcatatcactttttattgagagtattttaatctcaatttctgaattagcaaaagtgatatga 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33959616 cagttattcgtgtaactaatcccaaattcaattttaattcatatcactttttattgagagtattttaatctcaatttctgaattagcataagtgatatga 33959715  T
Q  125 aagtagaaaacgagagaagaacagaggaagatggtg 160  Q
    | |||| |||||||||||||||||||||||||||||    
T  33959716 acgtaggaaacgagagaagaacagaggaagatggtg 33959751  T

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Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 252 - 333
Target Start/End: Complemental strand, 33884354 - 33884273
Alignment:
Q  252 tatttggtcaatgctaaatcacaagtaatttcaaaagccttcgtagctcctgttaactctgcctgaaaaacatcactaatat 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33884354 tatttggtcaatgctaaatcacaagtaatttcaaaagccttcgtagctcctgttaactctgcctgaaaaacatcaccaatat 33884273  T

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Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 33959898 - 33959979
Alignment:
Q  252 tatttggtcaatgctaaatcacaagtaatttcaaaagccttcgtagctcctgttaactctgcctgaaaaacatcactaatat 333  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33959898 tatttggtcaatgctaaatcacaagtaatttcaaaagccttcgtagctcctgttaactctgcctgaaaaacatcaccaatat 33959979  T

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Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 377 - 453
Target Start/End: Complemental strand, 33884036 - 33883957
Alignment:
Q  377 ctaaaatggatgcactct---atctgaaaacaccactacaagcaagtcctgtccaacgtataactacgccaccatctgtg 453  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33884036 ctaaaatggatgcactcttatatctgaaaacaccactacaagcaagtcctgtccaacgtataactacgccgccatctgtg 33883957  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 377 - 453
Target Start/End: Original strand, 33960218 - 33960297
Alignment:
Q  377 ctaaaatggatgcactct---atctgaaaacaccactacaagcaagtcctgtccaacgtataactacgccaccatctgtg 453  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33960218 ctaaaatggatgcactcttatatctgaaaacaccactacaagcaagtcctgtccaacgtataactacgccgccatctgtg 33960297  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 361
Target Start/End: Complemental strand, 33884084 - 33884052
Alignment:
Q  329 aatatcaatgttttaagaaaaataacctgttgt 361  Q
    ||||| |||||||||||||||||||||||||||    
T  33884084 aatattaatgttttaagaaaaataacctgttgt 33884052  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 361
Target Start/End: Original strand, 33960168 - 33960200
Alignment:
Q  329 aatatcaatgttttaagaaaaataacctgttgt 361  Q
    ||||| |||||||||||||||||||||||||||    
T  33960168 aatattaatgttttaagaaaaataacctgttgt 33960200  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 45560323 - 45560273
Alignment:
Q  26 agttattcgtgtaactaatcccaaattcaattttaattcatatcacttttt 76  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  45560323 agttattcttataactaatcccaaattcaattttaattcatatcacttttt 45560273  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 3347053 - 3347014
Alignment:
Q  34 gtgtaactaatcccaaattcaattttaattcatatcactt 73  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3347053 gtgtaactaatcccaaattcaattttaattcatatcactt 3347014  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 37 - 74
Target Start/End: Complemental strand, 40699727 - 40699690
Alignment:
Q  37 taactaatcccaaattcaattttaattcatatcacttt 74  Q
    |||||||||||||||||||||||||| |||||||||||    
T  40699727 taactaatcccaaattcaattttaatacatatcacttt 40699690  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 27924420 - 27924380
Alignment:
Q  26 agttattcgtgtaactaatcccaaattcaattttaattcat 66  Q
    ||||||| ||||||||||| |||||||||||||||| ||||    
T  27924420 agttatttgtgtaactaattccaaattcaattttaactcat 27924380  T

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