View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_11 (Length: 453)
Name: NF19271_low_11
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 298
Target Start/End: Complemental strand, 4700513 - 4700228
Alignment:
| Q |
14 |
aactagctcgaatggctgcatatacgatttatgctcgtgattttgatgctatacatgatgtatgtagctcaaaagtaagtatgaaa-gttttacggtatt |
112 |
Q |
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| T |
4700513 |
aactagctcgaatgactgcatacacaacttatgctcatgattttgatgatatacatgatgtttgtagctcaaaagtaagtatgaaaagttttacggtatt |
4700414 |
T |
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| Q |
113 |
caaaaggacttgaatgatattatgatgttagacaaagtttattataatcttaagtttgaaatagtttgtgagtggttcataaagtttgttcaatattaag |
212 |
Q |
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| T |
4700413 |
caaaaggacttgaatgatattatgatgttcgacaaagtttattataatcttaagtttgaaataatttgtgagtggttcataaagtttgttcaatattaag |
4700314 |
T |
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| Q |
213 |
tggtaaatgtaatgtaaaatactaatgggattaaaacgttgagattagacttcatcaatcattttctcaagtatccatataattaa |
298 |
Q |
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| T |
4700313 |
tggtaaaagtaatttaaaatactaatgggatgaaaacgttgagattagacttcatcaatcattttctcaagtatccatataattaa |
4700228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 399
Target Start/End: Complemental strand, 4700000 - 4699894
Alignment:
| Q |
297 |
aatacacatatttgtagctaacatcactgtgacc----gtctatttaaaagtaactaattcattaataagatgatagatcaagtttattttttgaatatc |
392 |
Q |
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||||||||||||||||||||||||||| | | | ||||||| |||||||| ||||||||||||||||||||| ||||||||||||| | ||||||| |
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| T |
4700000 |
aatacacatatttgtagctaacatcacattcatccaatgtctattcaaaagtaattaattcattaataagatgatatatcaagtttatttctcgaatatc |
4699901 |
T |
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| Q |
393 |
ctaataa |
399 |
Q |
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|||||| |
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| T |
4699900 |
ataataa |
4699894 |
T |
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