View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19271_low_12 (Length: 445)

Name: NF19271_low_12
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19271_low_12
NF19271_low_12
[»] chr1 (4 HSPs)
chr1 (1-433)||(31279306-31279738)
chr1 (386-433)||(4449661-4449708)
chr1 (386-433)||(9826483-9826530)
chr1 (387-433)||(9812087-9812133)
[»] chr5 (1 HSPs)
chr5 (384-433)||(40235031-40235080)
[»] chr4 (2 HSPs)
chr4 (384-433)||(39936151-39936200)
chr4 (387-433)||(28745669-28745715)
[»] chr6 (6 HSPs)
chr6 (386-433)||(3894881-3894928)
chr6 (386-433)||(24976368-24976415)
chr6 (386-433)||(24977799-24977846)
chr6 (388-433)||(12770801-12770846)
chr6 (388-433)||(12777056-12777101)
chr6 (388-433)||(12766786-12766831)
[»] chr3 (7 HSPs)
chr3 (386-433)||(16724902-16724949)
chr3 (386-433)||(18177772-18177819)
chr3 (388-433)||(20204893-20204938)
chr3 (388-433)||(24835099-24835144)
chr3 (388-433)||(22261736-22261781)
chr3 (388-433)||(22266718-22266763)
chr3 (392-433)||(35269878-35269919)
[»] chr2 (3 HSPs)
chr2 (386-433)||(43822042-43822089)
chr2 (386-433)||(44909797-44909844)
chr2 (387-433)||(14106094-14106140)
[»] scaffold0432 (1 HSPs)
scaffold0432 (386-435)||(5847-5896)


Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 31279738 - 31279306
Alignment:
Q  1 tcaattttccatctgcatgataatgcttgtaaactgcctgtnnnnnnngtggaaataaaacatttctataaggaagaaaaatggaacatgtataatattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279738 tcaattttccatctgcatgataatgcttgtaaactgcctgtaaaaaaagtggaaataaaacatttctataaggaagaaaaatggaacatgtataatattt 31279639  T
Q  101 gttctatcatattccataaaatatggtttaatgcataaccttaaggctgctaccagcagcaatttggatagcaatgttatttcctagagaagctatttgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31279638 gttctatcatattccataaaatatggtttaatgcataaccttaaggctgctaccagcagcaatttggatagcaatgttatttcctagagaagctatttgc 31279539  T
Q  201 tggaataaggcaatagaccaatacccccagaatcctttaagaatgattgacaagaaattaaaagaatgttacaatgatcatggaatacgaactgcagcga 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31279538 tggaataaggcaatagaccaatacccccagaatcctttaagaatgattgacaagaaattaaaagaatgttacaatgatcatggaatacgaactgcagcaa 31279439  T
Q  301 gcacaaagttgcaaatataacagttgaccattgaatgcaatatgcagagaaactacatattatatgtaagttaaaaatttaacataaatcagagtggcgc 400  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  31279438 gcacaaagttgcaaatataacagttgaccattgaatgcaatttgaagagaaactacatattatatgtaagttaaaattttaatataaatcagagtggcgc 31279339  T
Q  401 agcggaagtgtggtgggcctataacccacaggt 433  Q
    |||||||| |||||||||| |||||||||||||    
T  31279338 agcggaagcgtggtgggcccataacccacaggt 31279306  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 433
Target Start/End: Complemental strand, 4449708 - 4449661
Alignment:
Q  386 aaatcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  4449708 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 4449661  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 433
Target Start/End: Complemental strand, 9826530 - 9826483
Alignment:
Q  386 aaatcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  9826530 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 9826483  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 433
Target Start/End: Complemental strand, 9812133 - 9812087
Alignment:
Q  387 aatcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    |||||||||||||||||||||| |||||||||| |||||||| ||||    
T  9812133 aatcagagtggcgcagcggaagcgtggtgggcccataacccataggt 9812087  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 433
Target Start/End: Complemental strand, 40235080 - 40235031
Alignment:
Q  384 ataaatcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  40235080 ataaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 40235031  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 433
Target Start/End: Original strand, 39936151 - 39936200
Alignment:
Q  384 ataaatcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  39936151 ataaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 39936200  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 433
Target Start/End: Complemental strand, 28745715 - 28745669
Alignment:
Q  387 aatcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||    
T  28745715 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 28745669  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 433
Target Start/End: Complemental strand, 3894928 - 3894881
Alignment:
Q  386 aaatcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  3894928 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 3894881  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 433
Target Start/End: Complemental strand, 24976415 - 24976368
Alignment:
Q  386 aaatcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  24976415 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 24976368  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 433
Target Start/End: Complemental strand, 24977846 - 24977799
Alignment:
Q  386 aaatcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  24977846 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 24977799  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 433
Target Start/End: Complemental strand, 12770846 - 12770801
Alignment:
Q  388 atcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  12770846 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 12770801  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 433
Target Start/End: Complemental strand, 12777101 - 12777056
Alignment:
Q  388 atcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  12777101 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 12777056  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 433
Target Start/End: Complemental strand, 12766831 - 12766786
Alignment:
Q  388 atcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    |||||||||||||||||||||  ||||||||| |||||||| ||||    
T  12766831 atcagagtggcgcagcggaagcatggtgggcccataacccataggt 12766786  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 433
Target Start/End: Complemental strand, 16724949 - 16724902
Alignment:
Q  386 aaatcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  16724949 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 16724902  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 433
Target Start/End: Complemental strand, 18177819 - 18177772
Alignment:
Q  386 aaatcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  18177819 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 18177772  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 433
Target Start/End: Original strand, 20204893 - 20204938
Alignment:
Q  388 atcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  20204893 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 20204938  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 433
Target Start/End: Complemental strand, 24835144 - 24835099
Alignment:
Q  388 atcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||    
T  24835144 atcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 24835099  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 433
Target Start/End: Original strand, 22261736 - 22261781
Alignment:
Q  388 atcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    |||| |||||||||||||||| |||||||||| |||||||||||||    
T  22261736 atcaaagtggcgcagcggaagcgtggtgggcccataacccacaggt 22261781  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 433
Target Start/End: Complemental strand, 22266763 - 22266718
Alignment:
Q  388 atcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    |||| |||||||||||||||| |||||||||| |||||||||||||    
T  22266763 atcaaagtggcgcagcggaagcgtggtgggcccataacccacaggt 22266718  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 433
Target Start/End: Complemental strand, 35269919 - 35269878
Alignment:
Q  392 gagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||| ||||||||| |||||||||| |||||||||||||    
T  35269919 gagtggcacagcggaagcgtggtgggcccataacccacaggt 35269878  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 43822042 - 43822089
Alignment:
Q  386 aaatcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  43822042 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 43822089  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 44909797 - 44909844
Alignment:
Q  386 aaatcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||    
T  44909797 aaatcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 44909844  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 387 - 433
Target Start/End: Complemental strand, 14106140 - 14106094
Alignment:
Q  387 aatcagagtggcgcagcggaagtgtggtgggcctataacccacaggt 433  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||    
T  14106140 aatcagagtggcgcagcggaagcgtggtgggcccataacccacaggt 14106094  T

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Target: scaffold0432 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 435
Target Start/End: Complemental strand, 5896 - 5847
Alignment:
Q  386 aaatcagagtggcgcagcggaagtgtggtgggcctataacccacaggttc 435  Q
    ||||||||||| ||||||||||| |||||||| | |||||||| ||||||    
T  5896 aaatcagagtgacgcagcggaagcgtggtgggtccataacccataggttc 5847  T

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