View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_13 (Length: 418)
Name: NF19271_low_13
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 24 - 337
Target Start/End: Complemental strand, 29009272 - 29008959
Alignment:
| Q |
24 |
cttcttcttcattgctctgagatttcactttctgaatttgcaggtacataaccaaattctctgttctgaattcataacaaactcttcaaccgcgcaaaga |
123 |
Q |
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| T |
29009272 |
cttcttcttcattgctctgagatttcactttctgaatttgcaggtacataaccacattctctgttctgaattcataacaaactcttcaaccgcgcaaaga |
29009173 |
T |
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| Q |
124 |
tcatatatgttcgcttcaacttcttgattaaattcttcaaattccgattctggtttcattttattcaaattcaccttcacatttctatataatttgcatt |
223 |
Q |
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| T |
29009172 |
tcatataggttcgcttcaacttcttgattacattcttcaaattccgattctggtttcattttattcaaattcaccttcacatttctatataatttgcatt |
29009073 |
T |
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| Q |
224 |
tgcacgctactattttcactgaaactaattcttcaatttcatttgacactgttacggtgttatattcattcaattagatgaagaatttgaatcgaagcta |
323 |
Q |
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|||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
29009072 |
tgcacgctacaattttcactgaaactaattcttcaattgcatttgatactgttacggtgttgtattcattcgattagatgaagaatttgaatcgaagcta |
29008973 |
T |
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| Q |
324 |
tagttaactctgtg |
337 |
Q |
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| T |
29008972 |
tagttaactctgtg |
29008959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 362 - 404
Target Start/End: Complemental strand, 29008934 - 29008892
Alignment:
| Q |
362 |
taggaaaatgaggccagtctgggcagtgaaagctatgttcgtg |
404 |
Q |
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| T |
29008934 |
taggaaaatgaggccagtctgggcagtgaaagctatgttcgtg |
29008892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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