View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19271_low_14 (Length: 396)

Name: NF19271_low_14
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19271_low_14
NF19271_low_14
[»] chr7 (2 HSPs)
chr7 (39-381)||(969591-969932)
chr7 (39-90)||(3394374-3394425)
[»] chr2 (6 HSPs)
chr2 (39-92)||(42714647-42714700)
chr2 (39-90)||(37994184-37994235)
chr2 (42-92)||(6436516-6436566)
chr2 (42-90)||(11985371-11985419)
chr2 (39-79)||(16375871-16375911)
chr2 (42-90)||(33923612-33923660)
[»] chr4 (7 HSPs)
chr4 (42-78)||(14121787-14121823)
chr4 (56-134)||(9643259-9643335)
chr4 (42-78)||(4937764-4937800)
chr4 (42-90)||(9146037-9146085)
chr4 (56-92)||(9634593-9634629)
chr4 (42-78)||(33920984-33921020)
chr4 (42-90)||(47158148-47158196)
[»] chr3 (3 HSPs)
chr3 (42-81)||(52116151-52116190)
chr3 (42-90)||(47042192-47042240)
chr3 (42-78)||(53508133-53508169)
[»] chr8 (2 HSPs)
chr8 (45-90)||(33214773-33214818)
chr8 (42-90)||(6831492-6831540)
[»] chr1 (1 HSPs)
chr1 (42-95)||(15492189-15492242)
[»] scaffold0113 (1 HSPs)
scaffold0113 (42-78)||(36788-36824)
[»] chr6 (2 HSPs)
chr6 (42-78)||(11321609-11321645)
chr6 (42-90)||(34018462-34018510)
[»] chr5 (1 HSPs)
chr5 (42-78)||(1409413-1409449)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 39 - 381
Target Start/End: Original strand, 969591 - 969932
Alignment:
Q  39 cacaagaaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaatggaagaaaaatatatatgcatatgggtgattctaaatcaaaaattga 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | |||||||||| |||||||||||||||||||||    
T  969591 cacaagaaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaatggaaggaaaaaaaa-atgcatatggatgattctaaatcaaaaattga 969689  T
Q  139 tctaaatccaccattctttgatgagtaaaagagaaaacgaacttcaatcaacttgcataatttttatgaatatgttgaaattatgttaagcc---nnnnn 235  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||            
T  969690 tctaaatccaccattctttgatgagtgaaagagaaaacgaacttcaatcaacttgcaaaaattttatgaatctgttgaaattatgttaagccaaaaaaac 969789  T
Q  236 nncattgactataaaacctaataataatccaagtttagtnnnnnnnntattccaatcaaagtattttgaattcgttagcccactgattttatgtannnnn 335  Q
      |||||||||| ||||||||||||||||||||||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||         
T  969790 atcattgactatcaaacctaataataatccaagtttagt-aaaaaaatattccaatcaaagtattttgaattggttagcccactgattttatgta--ttt 969886  T
Q  336 nnnnccacgtgcccgatctttgcagtgtcaccccatggtatatttt 381  Q
        ||||||||||||||||||||||||||||||||||||||||||    
T  969887 ttttccacgtgcccgatctttgcagtgtcaccccatggtatatttt 969932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 3394425 - 3394374
Alignment:
Q  39 cacaagaaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaa 90  Q
    |||||||||||||||  |||| |||||||||||||||||| ||| |||||||    
T  3394425 cacaagaaaaaacttcatatacgtgaaaatcacttatttagatcgaaagaaa 3394374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 42714700 - 42714647
Alignment:
Q  39 cacaagaaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaatg 92  Q
    |||||||||||||||  ||||||| ||||||||||||||| ||| |||||||||    
T  42714700 cacaagaaaaaacttgatatatgtaaaaatcacttatttagatcgaaagaaatg 42714647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 37994235 - 37994184
Alignment:
Q  39 cacaagaaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaa 90  Q
    |||||||||| ||||  | ||||||||||||||||||||||||| |||||||    
T  37994235 cacaagaaaacacttgatctatgtgaaaatcacttatttaaatcgaaagaaa 37994184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 6436566 - 6436516
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaatg 92  Q
    ||||||||||||  ||| ||||||||||||||||||| ||| |||||||||    
T  6436566 aagaaaaaactttatatgtgtgaaaatcacttatttagatcgaaagaaatg 6436516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 11985371 - 11985419
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaa 90  Q
    ||||||||||||  |||||||||||| |||||||||||||  |||||||    
T  11985371 aagaaaaaacttgatatatgtgaaaaccacttatttaaattgaaagaaa 11985419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 16375911 - 16375871
Alignment:
Q  39 cacaagaaaaaacttattatatgtgaaaatcacttatttaa 79  Q
    |||||||||||||||  ||||||||||||||| ||||||||    
T  16375911 cacaagaaaaaacttgatatatgtgaaaatcatttatttaa 16375871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 33923660 - 33923612
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaa 90  Q
    ||||||||||||| ||| |||||||| |||||||||||||  |||||||    
T  33923660 aagaaaaaacttaatatgtgtgaaaaccacttatttaaattgaaagaaa 33923612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 14121823 - 14121787
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttattta 78  Q
    |||||||||||| ||||||||||||||||||||||||    
T  14121823 aagaaaaaacttgttatatgtgaaaatcacttattta 14121787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 134
Target Start/End: Complemental strand, 9643335 - 9643259
Alignment:
Q  56 tatatgtgaaaatcacttatttaaatctaaagaaatggaagaaaaatatatatgcatatgggtgattctaaatcaaaaa 134  Q
    ||||||||||||||||||||||| ||| ||||||||||  |||||| | | ||||| ||| |||||||||  |||||||    
T  9643335 tatatgtgaaaatcacttatttagatcgaaagaaatgg--gaaaaaaaaagatgcagatgagtgattctaggtcaaaaa 9643259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 4937800 - 4937764
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttattta 78  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  4937800 aagaaaaaacttaatatatatgaaaatcacttattta 4937764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 9146037 - 9146085
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaa 90  Q
    ||||||||||||| ||| ||||||||| || |||||||||| |||||||    
T  9146037 aagaaaaaacttaatatttgtgaaaataacctatttaaatcgaaagaaa 9146085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 9634629 - 9634593
Alignment:
Q  56 tatatgtgaaaatcacttatttaaatctaaagaaatg 92  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  9634629 tatatgtgaaaatcacttatttagatcgaaagaaatg 9634593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 33921020 - 33920984
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttattta 78  Q
    ||||||||||||  |||||||||||||||||||||||    
T  33921020 aagaaaaaacttgatatatgtgaaaatcacttattta 33920984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 47158196 - 47158148
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaa 90  Q
    ||||||||||||  |||||||| |||||||||||||||||  |||||||    
T  47158196 aagaaaaaacttgatatatgtggaaatcacttatttaaattgaaagaaa 47158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 81
Target Start/End: Original strand, 52116151 - 52116190
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttatttaaat 81  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  52116151 aagaaaaaacttgatatatgtgaaaatcacttatttaaat 52116190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 47042192 - 47042240
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaa 90  Q
    |||||||||| |  ||||||||||||||||||||||||||  |||||||    
T  47042192 aagaaaaaacatgatatatgtgaaaatcacttatttaaattgaaagaaa 47042240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 53508169 - 53508133
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttattta 78  Q
    ||||||||||||  |||||||||||||||||||||||    
T  53508169 aagaaaaaacttgatatatgtgaaaatcacttattta 53508133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 33214773 - 33214818
Alignment:
Q  45 aaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaa 90  Q
    |||||||||| |||||| |||||||||||||||||||  |||||||    
T  33214773 aaaaaacttaatatatgcgaaaatcacttatttaaattgaaagaaa 33214818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 6831540 - 6831492
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaa 90  Q
    ||||||||||||  ||||||||||| |||||||||| |||| |||||||    
T  6831540 aagaaaaaacttgatatatgtgaaattcacttatttgaatcgaaagaaa 6831492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 15492242 - 15492189
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaatggaa 95  Q
    ||||||||||||  ||||||||||||||| ||||||| ||  ||||||||||||    
T  15492242 aagaaaaaacttgatatatgtgaaaatcatttatttagattgaaagaaatggaa 15492189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 36788 - 36824
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttattta 78  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  36788 aagaaaaaacttagtatatgtaaaaatcacttattta 36824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 11321609 - 11321645
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttattta 78  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  11321609 aagaaaaaacttaatatatgtgaaaaccacttattta 11321645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 34018510 - 34018462
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttatttaaatctaaagaaa 90  Q
    ||||||||||||  |||||||||||| |||||||||||||  |||||||    
T  34018510 aagaaaaaacttgatatatgtgaaaaccacttatttaaattgaaagaaa 34018462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 1409449 - 1409413
Alignment:
Q  42 aagaaaaaacttattatatgtgaaaatcacttattta 78  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  1409449 aagaaaaaatttaatatatgtgaaaatcacttattta 1409413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University