View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_16 (Length: 393)
Name: NF19271_low_16
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 259
Target Start/End: Original strand, 31395674 - 31395923
Alignment:
| Q |
10 |
aagaatattgaatggttaaagcaatatatgctgaaatgagaatcataaaggttacaaaaagatggagtgtaaataaaattatataggcttaaaagtaaga |
109 |
Q |
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| T |
31395674 |
aagaaaattgaatggttaaagcaatatatgctgaaatgagaatcataaaagttacaaaaagatgaagtgtaaataaaattatataggcttaaaaataaga |
31395773 |
T |
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| Q |
110 |
tataattttcaatttaactatatatgttggcagatacattgatgattagtacaaattggtttgagtaatttcaatggaaaggtacacaaagaagaaggac |
209 |
Q |
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| T |
31395774 |
tataattttcaatttaactatatatgttggcagatacattgatgattagtacaaattggtttgagtaatttcaatggaaaggtacacaaagaagaaggac |
31395873 |
T |
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| Q |
210 |
aattaaagtcagtattacagggggtaatttcttctctttctcctgcaatg |
259 |
Q |
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| T |
31395874 |
aattaaagtcagtattacaaggggtaatttcttctctttctcctgcaatg |
31395923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 31395989 - 31396053
Alignment:
| Q |
325 |
gatgagaaaaatcacttaccagcttctgcattgcatgcaaccaaaaatatgaaaatcatgataag |
389 |
Q |
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| T |
31395989 |
gatgagaaaattcacttaccagcttctgcattgcatgcaaccaaaaatatgaaaatcatgataag |
31396053 |
T |
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