View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_18 (Length: 377)
Name: NF19271_low_18
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 38290645 - 38290307
Alignment:
| Q |
1 |
ggaatgtaatattcaagaaagaaattgaagagaagttggatataggtcaccatgactgtcacgtggcatatcacatggtttagggtccatcagtgacaag |
100 |
Q |
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| T |
38290645 |
ggaatgtaatattcaagaaagaaattgaagagaagttggatataggtcaccatgactgtcacgtggcatatcacatggtttagggtccatcagtgacaag |
38290546 |
T |
|
| Q |
101 |
caagaagataatatatatgcatgtatatggtttgaactttgaacaacacctatttttgtagggcaaattttttcataatgtgacaaaatttaactccaca |
200 |
Q |
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| T |
38290545 |
caagaagataatatatatgcatgtatatggtttgaactttgaacaacacctatttttttagggcaaattttttcataatgtgacaaaatttaactccac- |
38290447 |
T |
|
| Q |
201 |
gtaatattcttctgatcaataatactccaccaaagggaagactggcacaaacnnnnnnnnaaaagaacttgtcacatgcatagaatattagaagtagaac |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38290446 |
--------------------aatactccaccaaagggaagactggcacaaacttttttttaaaagaacttgtcacatgcatagaatattagaagtagaac |
38290367 |
T |
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| Q |
301 |
cctgctttatactttatgctgcatataattttcaatttctgaagttatagttatagaaca |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38290366 |
cctgctttatactttatgctgcatataattttcaatttctgaagttatagttatagaaca |
38290307 |
T |
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