View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19271_low_19 (Length: 368)

Name: NF19271_low_19
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19271_low_19
NF19271_low_19
[»] chr3 (12 HSPs)
chr3 (13-349)||(2855925-2856258)
chr3 (13-342)||(2768759-2769085)
chr3 (13-342)||(2758904-2759230)
chr3 (13-342)||(2838722-2839048)
chr3 (13-349)||(2748688-2749018)
chr3 (13-330)||(2797051-2797365)
chr3 (13-334)||(2818247-2818565)
chr3 (13-349)||(5412597-5412909)
chr3 (13-330)||(2790048-2790371)
chr3 (123-342)||(2807070-2807283)
chr3 (13-65)||(2755734-2755786)
chr3 (147-205)||(22648771-22648829)
[»] scaffold0691 (1 HSPs)
scaffold0691 (17-342)||(6274-6596)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 349
Target Start/End: Complemental strand, 2856258 - 2855925
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt 112  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  2856258 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgatacatagggccaatcctcatggacgtggatctttagtcaacaaggtt 2856159  T
Q  113 acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggt 212  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||    
T  2856158 acaagccgaatcaaaactttgattccccatcataaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagccagaggt 2856059  T
Q  213 ataacttccaaatttcacatgaacaaggatccacaagcagcagcaacagcagtactggagcgacagaaaatggaagatggcgtgatcctcggctgtcttc 312  Q
    ||||||| ||||||||||| || ||||||||| |||||   || ||| ||||   ||||| |||||||||||||||||||||||||||||| ||||||||    
T  2856058 ataactttcaaatttcacacgagcaaggatcctcaagccaaagaaaccgcag---tggagagacagaaaatggaagatggcgtgatcctcgactgtcttc 2855962  T
Q  313 ccttttcattgaagaaacagaagttgtaggcattgaa 349  Q
    |||||||||||||||||||||||||||||||||||||    
T  2855961 ccttttcattgaagaaacagaagttgtaggcattgaa 2855925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 2768759 - 2769085
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt 112  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||| ||   |||| ||||||||| ||  |||  ||    
T  2768759 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttgacccatagggccaatcgtcccagacgcggatctttaatcttcaagatt 2768858  T
Q  113 acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggt 212  Q
     |||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  2768859 gcaagcctaatcaaaactttgactccccgtcataaaattgcattagagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagcgagaggt 2768958  T
Q  213 ataacttccaaatttcacatgaacaaggatccacaagcagcagcaacagcagtactggagcgacagaaaatggaagatggcgtgatcctcggctgtcttc 312  Q
    ||| ||| |||| ||||||||||||||||||| ||| |||||| ||   ||||| ||||| | |||||| |||||||||||||||||||||| |||||||    
T  2768959 atagctttcaaacttcacatgaacaaggatcctcaaacagcaggaa---cagtagtggagagtcagaaagtggaagatggcgtgatcctcggatgtcttc 2769055  T
Q  313 ccttttcattgaagaaacagaagttgtagg 342  Q
    ||| || ||||||||||||||| |||||||    
T  2769056 cctctttattgaagaaacagaaattgtagg 2769085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 13 - 342
Target Start/End: Original strand, 2758904 - 2759230
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt 112  Q
    |||||||||||| ||||||| ||||||| | ||||| ||||| |||||| ||||||||| ||||||||||| |||  | |||||| || |||||||  ||    
T  2758904 gagagaagcatcgtttcgcattgaagatataattgacgaataccttcggctgatccatacggccaatcctcctggtagcggatctgtattcaacaagatt 2759003  T
Q  113 acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggt 212  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| || |||||| |||||||||||||||||||| |||||    
T  2759004 acaagcccaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaattcacggaatcaaggaaagaagcgtgaggt 2759103  T
Q  213 ataacttccaaatttcacatgaacaaggatccacaagcagcagcaacagcagtactggagcgacagaaaatggaagatggcgtgatcctcggctgtcttc 312  Q
    ||||||| ||||||||| |||||||||||||| ||| |||||||||   || ||| | || || ||||||||||||||||||||||||||| ||||||||    
T  2759104 ataactttcaaatttcaaatgaacaaggatcctcaaacagcagcaa---cactaccgaagagaaagaaaatggaagatggcgtgatcctcgactgtcttc 2759200  T
Q  313 ccttttcattgaagaaacagaagttgtagg 342  Q
    |||||||||||||||||||||| |||||||    
T  2759201 ccttttcattgaagaaacagaaattgtagg 2759230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 2839048 - 2838722
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt 112  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||  | || |||||||||||||||| |||| |  ||||||||  ||  | |       
T  2839048 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcgactaatgcatagggccaatcctcctggatgcagatctttatgcatgactc-- 2838951  T
Q  113 acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggt 212  Q
     ||||   |||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| || ||| || |||||||||| |||||||||||||||    
T  2838950 -caaggttaatcaaaactttgattccccgtcacaaaattgcatcagagattcaagacatcaagctgacaactcacggaatcaagaaaagaagcgagaggt 2838852  T
Q  213 ataacttccaaatttcacatgaacaaggatccacaagcagcagcaacagcagtactggagcgacagaaaatggaagatggcgtgatcctcggctgtcttc 312  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||||||||||| |||||| | ||||||||||||||||||  || ||||| ||||||||    
T  2838851 ataactttcaaatttcaaatgaacaaggatcctcaagcagcagcaacagcagtcctggagaggcagaaaatggaagatggcacgaccctcgactgtcttc 2838752  T
Q  313 ccttttcattgaagaaacagaagttgtagg 342  Q
    |||||||||||||||||||||| |||||||    
T  2838751 ccttttcattgaagaaacagaaattgtagg 2838722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 2748688 - 2749018
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt 112  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||||| | || |||||||||||||||| | || | ||||||||||||  |||  ||    
T  2748688 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggctaatgcatagggccaatcctcctagatgcggatctttagtcggcaagatt 2748787  T
Q  113 acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggt 212  Q
     |||| | ||||||||||||||||||||||||| | || ||||| || |||||||||||||| || |||||||| ||||||||||||||||| |||||||    
T  2748788 gcaaggcaaatcaaaactttgattccccgtcatcatatagcatctgaaattcaggacattaaattatcaattcgtggaatcaaggaaagaagtgagaggt 2748887  T
Q  213 ataacttccaaatttcacatgaacaaggatccacaagcagcagcaacagcagtactggagcgacagaaaatggaagatggcgtgatcctcggctgtcttc 312  Q
    ||||||| ||||||||||| ||||||||| |  |||||||||  | ||    ||  |||| || ||||||||||| ||||| ||||||||| ||||||||    
T  2748888 ataactttcaaatttcacacgaacaaggaacttcaagcagcattagca----ta--ggagagagagaaaatggaaaatggcatgatcctcgactgtcttc 2748981  T
Q  313 ccttttcattgaagaaacagaagttgtaggcattgaa 349  Q
     ||||| |||||||||||||||||||| || ||||||    
T  2748982 tctttttattgaagaaacagaagttgttggtattgaa 2749018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 2797051 - 2797365
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt 112  Q
    |||||||||||||||||||| ||||||||||||||||||||| |||| | |||| ||||||||| ||||||  ||| | ||||||||||||  |||  ||    
T  2797051 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcagctgatgcatagggcctatcctccgggatgcggatctttagtctgcaagatt 2797150  T
Q  113 acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggt 212  Q
     |||| | ||||||||| |||||| ||| |||  | || ||||| |||||| || |||||||| | |||||||| ||||||||||||||||| |||||||    
T  2797151 gcaagtctaatcaaaacattgatttcccttcaccagatagcatctgagattaagaacattaagatatcaattcgtggaatcaaggaaagaagtgagaggt 2797250  T
Q  213 ataacttccaaatttcacatgaacaaggatccacaagcagcagcaacagcagtactggagcgacagaaaatggaagatggcgtgatcctcggctgtcttc 312  Q
    ||||||| |||||||||||   || ||||||  ||||||||| |||||||||||   ||| ||| || ||| |||||||| |||||||||| ||||||||    
T  2797251 ataactttcaaatttcacagacaccaggatcatcaagcagcaacaacagcagta---gagagacggataatagaagatggtgtgatcctcgactgtcttc 2797347  T
Q  313 ccttttcattgaagaaac 330  Q
    |||||| |||||||||||    
T  2797348 cctttttattgaagaaac 2797365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 2818247 - 2818565
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt 112  Q
    |||||| ||||||||||||| ||||||||||||||||||||| ||||  |||||||||||| ||||| |||  ||| |  ||||||| ||   |||  ||    
T  2818247 gagagatgcatcatttcgcattgaagatgtcattgatgaataccttcttttgatccataggaccaattctccaggatgcagatctttggtatgcaagatt 2818346  T
Q  113 acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggt 212  Q
     ||||   ||| || ||||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  2818347 ccaagattaatgaagactttgactccccgttatgaaattgcatcagagattcaggacatcaagttgtcaattcgtggaatcaaggaaagaagcgagaggt 2818446  T
Q  213 ataacttccaaatttcacatgaacaaggatccacaagcagcagcaacagcagtactggagcgacagaaaatggaagatggcgtgatcctcggctgtcttc 312  Q
    |||||||||||||||| ||||||||||||||| |  ||   |||||| |  |   ||||| | |||| |  ||| |||||||||||||||| ||||||||    
T  2818447 ataacttccaaatttcgcatgaacaaggatcctcgtgccaaagcaacggatg---tggagagtcagacacaggaggatggcgtgatcctcgactgtcttc 2818543  T
Q  313 ccttttcattgaagaaacagaa 334  Q
     |||||||||||||||||||||    
T  2818544 tcttttcattgaagaaacagaa 2818565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 5412597 - 5412909
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgtt 112  Q
    |||||||||||||||||||| ||||||||||||||| ||||| | |||| | || ||||||| |||||||| |||| |  |||||||||||  |||  ||    
T  5412597 gagagaagcatcatttcgcattgaagatgtcattgacgaataccatcggctaatgcatagggtcaatcctcttggatgcagatctttagtctgcaagatt 5412696  T
Q  113 acaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggt 212  Q
     |||||   ||||||||||||||||||| |||| | || ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  5412697 gcaagcttgatcaaaactttgattccccatcatcagatagcatctgagattcaggacattaagttgtcaattcgtggaatcaaggaaagaagtgagaggt 5412796  T
Q  213 ataacttccaaatttcacatgaacaaggatccacaagcagcagcaacagcagtactggagcgacagaaaatggaagatggcgtgatcctcggctgtcttc 312  Q
    ||||||| |||||||||                     ||||||||||||||||   ||| ||||||||||||||||||||| |||||||| ||||||||    
T  5412797 ataactttcaaatttca---------------------agcagcaacagcagta---gagagacagaaaatggaagatggcgagatcctcgactgtcttc 5412872  T
Q  313 ccttttcattgaagaaacagaagttgtaggcattgaa 349  Q
    ||| ||||||  |||||||||||||||||| ||||||    
T  5412873 cctattcattacagaaacagaagttgtaggaattgaa 5412909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 2790048 - 2790371
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggc------caatcctcatgga---cgtggatctttagtc 103  Q
    |||||||||||||||||||| ||||||| |||| |||||||| |||||| | || ||||||||      |||||||  ||||   |||  ||||||| ||    
T  2790048 gagagaagcatcatttcgcattgaagatatcatcgatgaataccttcggctcatgcatagggcaaaatccaatccttctggatgccgtcaatctttattc 2790147  T
Q  104 aacaatgttacaagccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaa 203  Q
      |||  || |||||| |||||||||||||||||||| |||| | || ||||| |||||| |  |||||||| | |||||||| ||||||||||||||||    
T  2790148 tgcaagattgcaagcctaatcaaaactttgattccccatcatcagatagcatctgagattaaaaacattaagatatcaattcgtggaatcaaggaaagaa 2790247  T
Q  204 gcgagaggtataacttccaaatttcacatgaacaaggatccacaagcagcagcaacagcagtactggagcgacagaaaatggaagatggcgtgatcctcg 303  Q
    | |||||||||||||| |||||||||||   || ||||||  |||||||||||||||||||||   ||| ||| || ||| ||||||||| |||||||||    
T  2790248 gtgagaggtataactttcaaatttcacagacaccaggatcatcaagcagcagcaacagcagta---gagagacggacaatagaagatggcatgatcctcg 2790344  T
Q  304 gctgtcttcccttttcattgaagaaac 330  Q
    | |||||||||||||||||||||||||    
T  2790345 gttgtcttcccttttcattgaagaaac 2790371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 123 - 342
Target Start/End: Original strand, 2807070 - 2807283
Alignment:
Q  123 tcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggtataacttcca 222  Q
    ||||||||||||||||||||||| | || |||||  |||| |  ||||||||| ||||  |||||||||||||||||||||| |||||||||||||| ||    
T  2807070 tcaaaactttgattccccgtcatcatatagcatctaagatccgagacattaaggtgtcggttcgcggaatcaaggaaagaagtgagaggtataacttaca 2807169  T
Q  223 aatttcacatgaacaaggatccacaagcagcagcaacagcagtactggagcgacagaaaatggaagatggcgtgatcctcggctgtcttcccttttcatt 322  Q
    |||||||||||||||||||||  ||   ||| ||||||||   ||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |||    
T  2807170 aatttcacatgaacaaggatcatca---agccgcaacagc---actagagagacagaaaatggaagatggcgtgatcctcgactgtcttccctttttatt 2807263  T
Q  323 gaagaaacagaagttgtagg 342  Q
    ||||||| |||| |||||||    
T  2807264 gaagaaagagaaattgtagg 2807283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 2755734 - 2755786
Alignment:
Q  13 gagagaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttga 65  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  2755734 gagagaagcatcatttcgcattgaagatgtcattgatgaataccttcggttga 2755786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 22648829 - 22648771
Alignment:
Q  147 aaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagc 205  Q
    |||||||||| |||||||| ||||||||||| |  ||||| ||||||||||||| ||||    
T  22648829 aaattgcatccgagattcaagacattaagttatttattcgtggaatcaaggaaaaaagc 22648771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 6596 - 6274
Alignment:
Q  17 gaagcatcatttcgcactgaagatgtcattgatgaatatcttcggttgatccatagggccaatcctcatggacgtggatctttagtcaacaatgttacaa 116  Q
    |||||||||||||||| ||||||||| ||||||||||| |||||| |||||||||||||||| |||| |||| | ||||| ||||||  |||  ||  ||    
T  6596 gaagcatcatttcgcattgaagatgttattgatgaataccttcggctgatccatagggccaaccctcctggatgcggatcattagtctgcaagattgtaa 6497  T
Q  117 gccgaatcaaaactttgattccccgtcataaaattgcatcagagattcaggacattaagttgtcaattcgcggaatcaaggaaagaagcgagaggtataa 216  Q
    ||| |||||||||||||||| | |  ||| | || ||||| |||||||||||||| ||| |||||||||| ||||||||||| ||||| || ||||||||    
T  6496 gcctaatcaaaactttgatttctcagcatcagatagcatctgagattcaggacataaagctgtcaattcgtggaatcaaggacagaagtgaaaggtataa 6397  T
Q  217 cttccaaatttcacatgaacaaggatccacaagcagcagcaacagcagtactggagcgacagaaaatggaagatggcgtgatcctcggctgtcttccctt 316  Q
    ||| ||||||| ||||||||  |||||  ||||   |||   |||||| || |||| | ||||||||||||||||||||||||||||  | ||| |||||    
T  6396 ctttcaaattttacatgaacctggatcatcaagtgtcag---cagcagcacaggagaggcagaaaatggaagatggcgtgatcctcgattatctgccctt 6300  T
Q  317 ttcattgaagaaacagaagttgtagg 342  Q
    || ||||||||||| |||||||||||    
T  6299 tttattgaagaaactgaagttgtagg 6274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University