View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19271_low_22 (Length: 339)

Name: NF19271_low_22
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19271_low_22
NF19271_low_22
[»] chr4 (1 HSPs)
chr4 (1-322)||(30518467-30518788)
[»] chr2 (3 HSPs)
chr2 (239-310)||(38896188-38896259)
chr2 (239-310)||(5435747-5435818)
chr2 (239-310)||(17858924-17858995)
[»] chr3 (2 HSPs)
chr3 (242-310)||(12105837-12105905)
chr3 (242-310)||(46988042-46988110)
[»] chr8 (1 HSPs)
chr8 (239-310)||(3271599-3271670)
[»] chr5 (2 HSPs)
chr5 (239-310)||(12938224-12938295)
chr5 (239-310)||(12952373-12952444)
[»] chr1 (2 HSPs)
chr1 (239-310)||(52371452-52371523)
chr1 (239-281)||(31644421-31644463)


Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 30518788 - 30518467
Alignment:
Q  1 agtagaaaacacaaatgctaatttccctcaaaatccaacaatgagtgcttctaataatcctcctgctttgaagagaaaaagaaaccttccaggaaatcca 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518788 agtagaaatcacaaatgctaatttccctcaaaatccaacaatgagtgcttctaataatcctcctgctttgaagagaaaaagaaaccttccaggaaatcca 30518689  T
Q  101 ggcatgttaattttctctctttttcttccctttataactctctcttcacctttatgattgaatatatcaataggtatattcaaagctaattaacttttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518688 ggcatgttaattttctctctttttcttccctttataactctctcttcacctttatgattgaatatatcaataggtatattcaaagctaattaacttttta 30518589  T
Q  201 ttagataaaagaaacattattgatcttttttatttgcacagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518588 ttagataaaagaaacattattgatcttttttatttgcacagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattc 30518489  T
Q  301 ttgtgtgaaacatgtgggaaag 322  Q
    ||||||||||||||||||||||    
T  30518488 ttgtgtgaaacatgtgggaaag 30518467  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 38896259 - 38896188
Alignment:
Q  239 cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaa 310  Q
    ||||||||||||||||||| ||| ||||||||||||| ||| | ||||| |||||||||||| |||||||||    
T  38896259 cagatcctgaagcagaagtgatatctttatcaccaaaaacattgatggcaacaaacagattcgtgtgtgaaa 38896188  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 5435818 - 5435747
Alignment:
Q  239 cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaa 310  Q
    ||||||||||||||||||| ||| |||||||||||||  || | ||||| |||||||||||| |||||||||    
T  5435818 cagatcctgaagcagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaa 5435747  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 17858924 - 17858995
Alignment:
Q  239 cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaa 310  Q
    |||| ||||||||| |||| ||| |||||||||||||  || | ||||| |||||||||||| |||||||||    
T  17858924 cagaccctgaagcaaaagtgatatctttatcaccaaaagcattgatggcaacaaacagattcgtgtgtgaaa 17858995  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 12105837 - 12105905
Alignment:
Q  242 atcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaa 310  Q
    |||||||||||||||| ||| |||||||||||||  || | ||||| |||||||||||| |||||||||    
T  12105837 atcctgaagcagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaa 12105905  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 310
Target Start/End: Complemental strand, 46988110 - 46988042
Alignment:
Q  242 atcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaa 310  Q
    |||||||||||||||| ||| |||||||||||||  || | ||||| |||||||||||| |||||||||    
T  46988110 atcctgaagcagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaa 46988042  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 310
Target Start/End: Complemental strand, 3271670 - 3271599
Alignment:
Q  239 cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaa 310  Q
    |||||||||||||| |||| ||| |||||||||||||  || | ||||| |||||||||||| |||||||||    
T  3271670 cagatcctgaagcaaaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaa 3271599  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 12938224 - 12938295
Alignment:
Q  239 cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaa 310  Q
    ||||||| ||||||||||| ||| |||||||||||||  || | ||||| |||||||||||| |||||||||    
T  12938224 cagatccggaagcagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaa 12938295  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 12952373 - 12952444
Alignment:
Q  239 cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaa 310  Q
    ||||||| ||||||||||| ||| |||||||||||||  || | ||||| |||||||||||| |||||||||    
T  12952373 cagatccggaagcagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaa 12952444  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 310
Target Start/End: Original strand, 52371452 - 52371523
Alignment:
Q  239 cagatcctgaagcagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaa 310  Q
    ||||||||||||||||||| ||| |||||||||||||  || | ||||| |||| ||||||| |||||||||    
T  52371452 cagatcctgaagcagaagtgatatctttatcaccaaaaccattgatggcaacaagcagattcgtgtgtgaaa 52371523  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 31644463 - 31644421
Alignment:
Q  239 cagatcctgaagcagaagttatagctttatcaccaaagacact 281  Q
    |||||||||| || ||||| |||||||||||||||||||||||    
T  31644463 cagatcctgatgctgaagtgatagctttatcaccaaagacact 31644421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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