View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_24 (Length: 323)
Name: NF19271_low_24
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 306
Target Start/End: Complemental strand, 37757266 - 37756965
Alignment:
| Q |
5 |
cacaacggcttaatcttgtaacttttttaactctaacttttaaacttgcaacgcaagcattataatttgttattttttcatgaaatgatgaatatttagt |
104 |
Q |
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| T |
37757266 |
cacaaaggtttaatcttttaacttttttaactctaacttttaaacttgcaacgcaagcattataatttgatattttttcatgaaatgatgaatatttagt |
37757167 |
T |
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| Q |
105 |
gtagtgaatattttctattggatggttacaatagtagagtatgttgtagttatttttaaaatatggttacaaagtaagcctacatgagaagatgatgaat |
204 |
Q |
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| T |
37757166 |
gtagtgaatattttctattggatggttacaatagtagagtatgttgtagttatttttaaaagatggttacaaagtaagcctacatgagaagatgatgaat |
37757067 |
T |
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| Q |
205 |
ttctattcgatgacggtgtaaaattattttacactgtcagaacatagtgatagtcatttaactcttattagttgaaatgaaaatgaaaacagtaaagtaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37757066 |
ttctattcgatgacggtgtaaaattattttacactgtcagtacatagtgatagtcatttaactcttactagttgaaatgaaaatgaaaacagtaaagtaa |
37756967 |
T |
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| Q |
305 |
ac |
306 |
Q |
| |
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|| |
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| T |
37756966 |
ac |
37756965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 47552932 - 47552834
Alignment:
| Q |
144 |
tatgttgtagttatttttaaaatatggttacaaagtaagcctacatgagaagatgatgaatttctattcgatgacggtgtaaaattattttacactgtc |
242 |
Q |
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| T |
47552932 |
tatgtggtagttattttgaaaagacagttataaagtaggcctacatagtaagatgatgagttcctattggatgacggtgtaaaactattttatactgtc |
47552834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 243
Target Start/End: Original strand, 47549905 - 47549953
Alignment:
| Q |
195 |
gatgatgaatttctattcgatgacggtgtaaaattattttacactgtca |
243 |
Q |
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|||| ||| ||||||||||| ||||||||||||||||||||| ||||| |
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| T |
47549905 |
gatggtgagtttctattcgaaaacggtgtaaaattattttacattgtca |
47549953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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