View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_25 (Length: 315)
Name: NF19271_low_25
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 1161047 - 1160824
Alignment:
| Q |
18 |
tgttcccctcccttctgagattattttcggttgaggtatgtttatccattgaattgcattcttaatatttcaacatatatat----taatggtttgatct |
113 |
Q |
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| T |
1161047 |
tgttcccttcccttctgagattattttcggttgaggtatgtttatccattgaattgcattcttaatatttcaacatatatatatattaatgatttgatct |
1160948 |
T |
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| Q |
114 |
atacatgtttatatcgtaattaagtttgttccaataattataggtctaacaaacaaataaagatatatatttgtacaaaatgatttgcaagaaatcttca |
213 |
Q |
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| T |
1160947 |
atacatgtttatatggtaattaagtttgttccaataattatagatctaacaaacaaataaagatatatatttgtacaaaatgatttgcaagaaatcttca |
1160848 |
T |
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| Q |
214 |
catatatacataaatatcatcatt |
237 |
Q |
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| T |
1160847 |
catatatacataaatatcatcatt |
1160824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 1160755 - 1160714
Alignment:
| Q |
245 |
ctttctattaccattttttgggaccacattaaattactttca |
286 |
Q |
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| T |
1160755 |
ctttctattaccattttttgggaccacattgaattactttca |
1160714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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