View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_28 (Length: 308)
Name: NF19271_low_28
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 3732052 - 3731770
Alignment:
| Q |
19 |
ctaaggtttagttcaataatgatgctattgagtattgaccatagttgagttttaatttgtatttgatgtcattcattttttggtacataatcaggaattc |
118 |
Q |
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| T |
3732052 |
ctaaggtttagttcaataatgatgctattgagtattgactatagttgagttttaatttgtatttgatgtcattcattttttggtacataatcaggaattc |
3731953 |
T |
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| Q |
119 |
aaattcacagaatacacagaagtgaaaaaatgttatccccatggataccatggagttgataaatgtggcagacctgtgtatattgagagaattgggatga |
218 |
Q |
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| T |
3731952 |
aaattcacagaatacacagaagtgaaaaaatgttatccccatggataccatggagttgataaatgtggcagacctgtgtatattgagagaattgggatga |
3731853 |
T |
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| Q |
219 |
tagatattaacaaactgtggcaaataaccacacaagaaaggcttatcaagcatcatgtgtcagaacaagagaaaacactaaga |
301 |
Q |
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| T |
3731852 |
tagatattaacaaactgtggcaaataaccacacaagaaaggcttatcaagcatcatgtgtcagaacaagagaaaacactaaga |
3731770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 64 - 301
Target Start/End: Complemental strand, 11684327 - 11684088
Alignment:
| Q |
64 |
tgagttttaatttgtatttg--atgtcattcattttttggtacataatcaggaattcaaattcacagaatacacagaagtgaaaaaatgttatccccatg |
161 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |
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| T |
11684327 |
tgagttttaatttgttttttcaatgtcattcattttttggtacataatcaggaattcaaatttccagaatacacagaagtgaaaaaatgctatcctcatg |
11684228 |
T |
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| Q |
162 |
gataccatggagttgataaatgtggcagacctgtgtatattgagagaattgggatgatagatattaacaaactgtggcaaataaccacacaagaaaggct |
261 |
Q |
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| T |
11684227 |
gattccatggggttgataaatgtggcaggtctgtgtatatcgagagaattgggatgatagatgttaacaaactgtggcaaataaccacacaagaaaggct |
11684128 |
T |
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| Q |
262 |
tatcaagcatcatgtgtcagaacaagagaaaacactaaga |
301 |
Q |
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| T |
11684127 |
tatcaagcatcatgtgtcagaacaagagaaaaccctaaga |
11684088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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