View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_3 (Length: 806)
Name: NF19271_low_3
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 361 - 787
Target Start/End: Complemental strand, 15871680 - 15871254
Alignment:
| Q |
361 |
gtatttgcttgtcatagtgtttccaaaagacaaaaataacatgagaatgagttgagaccatgttgaaatttttcataatgcttattcacacaagtttccc |
460 |
Q |
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| T |
15871680 |
gtatttgcttgtcatagtgttcccaaaagacaaaaataacatgaaaatgagttgctaccatgttgaaaattttcataatgcttattcacacaagtttccc |
15871581 |
T |
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| Q |
461 |
aataatgtttgcataaaataaaaatgaaaaccacaaattgagaaattggtggactcaaaagcatatagaaccatataatatttgattgaaactaaaactt |
560 |
Q |
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| T |
15871580 |
aataatgtttgcataaaataaaaatgaaaaccacaaattgagaaattggtggactcaaaagcatagagaagcatataatatttgattgaaactaaaactt |
15871481 |
T |
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| Q |
561 |
ctttgtctcaagcatcaaaagtttactagaaatgcattaataaagtaaaacactgggagagatatatcacagaatttctctccctacctaatggcaattt |
660 |
Q |
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| T |
15871480 |
ctttgtctcaagcatcaaaagtttactagaaatgcattaataaagtaaaacactgggagagatatatcacagaatttctctccctacctaatggcaattt |
15871381 |
T |
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| Q |
661 |
atcttttctttccttaactatctacaacaacatttgtctgtgttgcttatattacacagtgtaatgttgttgcatagtctctatgtcaagtcctttcagc |
760 |
Q |
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| T |
15871380 |
atcttttctttccttaactatctacaacaacatttgtctgtgttgcttatattacacagtgtaatgttgttgcatagtctctatgtccagtcctttcagc |
15871281 |
T |
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| Q |
761 |
ttcacaacagattcaacatgtccttta |
787 |
Q |
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| T |
15871280 |
ttcacaacagattcaacatgtccttta |
15871254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 87 - 349
Target Start/End: Complemental strand, 15871987 - 15871728
Alignment:
| Q |
87 |
gtataattgtatgcaagttgagacccagaggctagttaagacaaacgtcaaagctcaaaagaggcacttaattaaagattactttcttacgctctttttc |
186 |
Q |
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| T |
15871987 |
gtataattgtatgcaagttgagactcagaggctagctaagacaaacatcaaagctcaaaagaggtacttgattaaagattactttcttatgctctttttt |
15871888 |
T |
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| Q |
187 |
taagnnnnnnnnngtttttgcgagtttggtcctggaggttcatctaggcaggcataaaaactcagaataaggattcatagattacctacaaattatatcc |
286 |
Q |
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| T |
15871887 |
taagaaaaaaa--gtttttgcgagtttggtcctggaggctcatcg-gacaggcataaaaactcagaataaacattcatagattacctacaaattatatcc |
15871791 |
T |
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| Q |
287 |
ttacgcgggaagcgatgatgaatccatgaccatgtaaggtatgaatcaattctttatcggtcg |
349 |
Q |
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| T |
15871790 |
ttacgcgggaagcgatgatgaatccatgaccatgtgaggtatgaatcaattctttatcggtcg |
15871728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 716 - 786
Target Start/End: Original strand, 45195920 - 45195990
Alignment:
| Q |
716 |
acagtgtaatgttgttgcatagtctctatgtcaagtcctttcagcttcacaacagattcaacatgtccttt |
786 |
Q |
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| T |
45195920 |
acagtgtagtgttgttggattgtctcaatgtcaagtcccttgagttttacaacagactcaacatgtccttt |
45195990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 15872028 - 15871999
Alignment:
| Q |
39 |
tatatttctttcttgtactcttatttgtag |
68 |
Q |
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| T |
15872028 |
tatatttctttcttgtactcttatttgtag |
15871999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 777
Target Start/End: Complemental strand, 50278384 - 50278323
Alignment:
| Q |
716 |
acagtgtaatgttgttgcatagtctctatgtcaagtcctttcagcttcacaacagattcaac |
777 |
Q |
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| T |
50278384 |
acagtataatgttgttgcatagtgtcgatatcaagtcccttaagcttcacgactgattcaac |
50278323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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