View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_31 (Length: 303)
Name: NF19271_low_31
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 1849308 - 1849595
Alignment:
| Q |
4 |
agacataacaaaaagaaaatgaatgaaaattagattcgaagaatttgtaaaagaaacttcttatagccacagcatagacgcatataaacnnnnnnnnn-- |
101 |
Q |
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| T |
1849308 |
agacataacaaaaagaaaatgaatgaaaattagattcgaagaatttgtaaaagaaacttcttatagccacagcatagacgcatataaacttttttttttt |
1849407 |
T |
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| Q |
102 |
---attacaaaagggtttaacacccaaatagacgcatattaactctgaataaatacatacatgaaatctctaagcacatgtttagttagaagagatgaca |
198 |
Q |
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| T |
1849408 |
tttattacaaaagggtttaacacccaaatagacgcatattaactctgaataaatacatacatgaaatctctaagcacatgtttagttagaagagatgaca |
1849507 |
T |
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| Q |
199 |
tgtaagaagaaaataaaatagaacgagaagatcacaaaagaagagatttgcaactttgatgcatttgattgaacacttttcatgtgcc |
286 |
Q |
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| T |
1849508 |
tgtaagaagaaaaaaaaatagaacgagaagatcacaaaagaagagatttgcaactttgatgcatttgattgaacacttttcatgtgcc |
1849595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 1836839 - 1836879
Alignment:
| Q |
208 |
aaaataaaatagaacgagaagatcacaaaagaagagatttg |
248 |
Q |
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| T |
1836839 |
aaaaaaaaatagaacgaaaagatcacaaaagaagagatttg |
1836879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 1834197 - 1834245
Alignment:
| Q |
10 |
aacaaaaagaaaatgaatgaaaattagattcgaagaatttgtaaaagaaa |
59 |
Q |
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| T |
1834197 |
aacagaaagaaaaggaatgaaaat-atattcgaagaatttgtaaaagaaa |
1834245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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