View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19271_low_34 (Length: 292)
Name: NF19271_low_34
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 31279738 - 31279461
Alignment:
| Q |
1 |
tcaattttccatctgcatgataatgcttgtaaactgcctgtnnnnnnngtggaaataaaacatttctataaggaagaaaaatggaacatgtataatattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31279738 |
tcaattttccatctgcatgataatgcttgtaaactgcctgtaaaaaaagtggaaataaaacatttctataaggaagaaaaatggaacatgtataatattt |
31279639 |
T |
|
| Q |
101 |
gttctatcatattccataaaatatggtttaatgcataaccttaaggctgctaccagcagcaatttggatagcaatgttatttcctagagaagctatttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31279638 |
gttctatcatattccataaaatatggtttaatgcataaccttaaggctgctaccagcagcaatttggatagcaatgttatttcctagagaagctatttgc |
31279539 |
T |
|
| Q |
201 |
tggaataaggcaatagaccaatacccccagaatcctttaagaatgattgacaagaaattaaaagaatgttacaatgat |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31279538 |
tggaataaggcaatagaccaatacccccagaatcctttaagaatgattgacaagaaattaaaagaatgttacaatgat |
31279461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University