View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_35 (Length: 291)
Name: NF19271_low_35
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 135
Target Start/End: Original strand, 41060395 - 41060513
Alignment:
| Q |
14 |
tactgttattccgtgttcatcatgcttatttttataagcctttttcttgtaaacgttacagattttttaaagttattacattcacagtaaatattacaga |
113 |
Q |
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| T |
41060395 |
tactgttattccttgttcaccatgcttattt--ataaacctttttcttgtaaacgttacaaattttttaaacttattacattcacagtaaatattacaga |
41060492 |
T |
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| Q |
114 |
tttttaagttttacgtttttgt |
135 |
Q |
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| T |
41060493 |
ttttt-agttttacgtttttgt |
41060513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 41060591 - 41060637
Alignment:
| Q |
152 |
atcacactgttttgttgttgtttgtataccatacattactttgtaac |
198 |
Q |
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| T |
41060591 |
atcacactgttttgttattgttagtataccaaacattactttgtaac |
41060637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 12103075 - 12102958
Alignment:
| Q |
20 |
tattccgtgttcatcatgcttatttttataagcctttttcttgtaaacgttacagattttttaaagttattacattcacagtaaatattacagattttta |
119 |
Q |
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| T |
12103075 |
tattccatgttcatcatgcttattc--ataagtctttttcttgtacacgttacagattttt-aaactta--acattcacagtaaatattacagattttta |
12102981 |
T |
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| Q |
120 |
agttttacgtttttgtaagtcaa |
142 |
Q |
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| T |
12102980 |
agttttacgattttgtaagtcaa |
12102958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 142
Target Start/End: Complemental strand, 34291022 - 34290987
Alignment:
| Q |
107 |
ttacagatttttaagttttacgtttttgtaagtcaa |
142 |
Q |
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| T |
34291022 |
ttacagatttttaagttttatgtttttgtaagtcaa |
34290987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 34291075 - 34291011
Alignment:
| Q |
14 |
tactgttattccgtgttcatcatgcttatttttataagcctttttcttgtaaacgttacagattttt |
80 |
Q |
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|||||||||||| | |||| |||| |||||| | |||| ||||||||||||||||||||||||||| |
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| T |
34291075 |
tactgttattcccttttcaccatgattattt--acaagcttttttcttgtaaacgttacagattttt |
34291011 |
T |
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