View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19271_low_39 (Length: 285)
Name: NF19271_low_39
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 5697414 - 5697157
Alignment:
| Q |
11 |
cagagagtacaaacaaattgatgtaaaatttacacatatatcttttataatataatatcttattataaagtgaaacaattaatattgtgaaaaaggaatc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5697414 |
cagagagtacaaacaaattgatgtaaaatttacacatatatcttttataatataatatcttattataaagtgaaacaattaatattgtgaaaaaggaatc |
5697315 |
T |
|
| Q |
111 |
acctttagaatattagggtaaattatgttgggacctctgctagagaacatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaa |
210 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5697314 |
acctttagaatattagggtcaattatgttgggacctctgctagagaacatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaa |
5697215 |
T |
|
| Q |
211 |
gttgtgccattggattaggagaagaatgaatatattgaacaagttttaaggtattctc |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5697214 |
gttgtgccattggattaggagaagaatgaatatattgaacaagttttaaggtattctc |
5697157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 111 - 268
Target Start/End: Complemental strand, 5685144 - 5684987
Alignment:
| Q |
111 |
acctttagaatattagggtaaattatgttgggacctctgctagagaacatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaa |
210 |
Q |
| |
|
||||||||||||||||||| ||| || ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5685144 |
acctttagaatattagggtcaataatattgggacctctactagagaagatggccatagagggtgctggtttggtatctaacacagttcttccaggcaaaa |
5685045 |
T |
|
| Q |
211 |
gttgtgccattggattaggagaagaatgaatatattgaacaagttttaaggtattctc |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
5685044 |
gttgtgccattggattaggagaagaatgaatatattgaactaattttaaggtattctc |
5684987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University