View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19271_low_42 (Length: 267)

Name: NF19271_low_42
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19271_low_42
NF19271_low_42
[»] chr3 (21 HSPs)
chr3 (18-262)||(6244929-6245173)
chr3 (20-262)||(13270704-13270946)
chr3 (18-253)||(6258847-6259082)
chr3 (18-253)||(6168536-6168777)
chr3 (18-253)||(6899733-6899974)
chr3 (18-247)||(7749653-7749888)
chr3 (18-253)||(6591496-6591737)
chr3 (27-206)||(6916793-6916978)
chr3 (18-253)||(6882149-6882390)
chr3 (18-120)||(6142070-6142172)
chr3 (18-197)||(6722237-6722422)
chr3 (18-121)||(8569116-8569219)
chr3 (145-253)||(6141931-6142039)
chr3 (18-202)||(7587543-7587733)
chr3 (18-121)||(6520333-6520436)
chr3 (18-253)||(6265336-6265577)
chr3 (20-199)||(6946940-6947125)
chr3 (18-120)||(8589485-8589587)
chr3 (18-123)||(8471317-8471422)
chr3 (143-205)||(5267724-5267786)
chr3 (50-123)||(6839107-6839180)
[»] chr1 (1 HSPs)
chr1 (18-253)||(35140515-35140756)
[»] chr7 (1 HSPs)
chr7 (18-206)||(6573466-6573660)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 6245173 - 6244929
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6245173 tcccttccaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcagaagg 6245074  T
Q  118 tttgctaaagggaatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaatcagctgttatgcca 217  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||  ||||||||    
T  6245073 tttgataaagggaatagccaaagatgaagaagagttgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaacaatcagcaattatgcca 6244974  T
Q  218 ttctgggctggtaagtaccatttcatcatgcatgatgatgtccat 262  Q
    |||||||||||||||||| |||||||||||||||||  |||||||    
T  6244973 ttctgggctggtaagtacaatttcatcatgcatgatcttgtccat 6244929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 13270704 - 13270946
Alignment:
Q  20 ccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaaggtt 119  Q
    |||||| |||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13270704 ccttccaatctgaagcattgttttgcatattgttctatatttcccaagggttatgagtttgaaaaggatggattaatcaagctttggatggcacaaggtt 13270803  T
Q  120 tgctaaagggaatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaatcagctgttatgccatt 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||  || |||||||    
T  13270804 tgctaaagggaatagccaaaaatgaagaagagttgggtaataaattcttcaatgatctagtgtcaatttcgtttttccaacaatcagcaattgtgccatt 13270903  T
Q  220 ctgggctggtaagtaccatttcatcatgcatgatgatgtccat 262  Q
    |||||||||||||||| |||||||||||||||||  |||||||    
T  13270904 ctgggctggtaagtactatttcatcatgcatgatcttgtccat 13270946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 6259082 - 6258847
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| || ||||||||| |||||||||||| ||||    
T  6259082 tcccttccaatctgaagcattgttttgcttattgttctatatttcccaagggttatgagtttgaaaagggtgaattaatcaagctttggatggcaaaagg 6258983  T
Q  118 tttgctaaagggaatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaatcagctgttatgcca 217  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||||| ||||||  ||||||||    
T  6258982 tttgctaaagggaataaccaaaaaagaagaagagttgggtaataaattcttcaatgatctagtgtcaatgtcttttttccaaccatcagcgattatgcca 6258883  T
Q  218 ttctgggctggtaagtaccatttcatcatgcatgat 253  Q
    |||||||||||||||||| |||||||||||||||||    
T  6258882 ttctgggctggtaagtactatttcatcatgcatgat 6258847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 6168777 - 6168536
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||||||  |||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  6168777 tcccttcaaatctgaagcattgttttgcatattgttctatatttcccaagggttataagtttgaaaaggatggattaatcaagctttggatggcacaagg 6168678  T
Q  118 tttgctaaag------ggaatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaatcagctgtt 211  Q
    ||||||||||      |||| || ||||||||||||||||||||||||| |||| ||  || ||||||||||||| || |||||||||||||||||  ||    
T  6168677 tttgctaaagtgttgcggaaaagacaaaaatgaagaagagttgggtaatgaattctttgatcatctagtgtcaatgtcatttttccaacaatcagcaatt 6168578  T
Q  212 atgccattctgggctggtaagtaccatttcatcatgcatgat 253  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  6168577 atgccattatgggctggtaagtactatttcatcatgcatgat 6168536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 6899974 - 6899733
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||||||| |||||||||||||||| | |||||||||| | ||||| ||||| ||||||||||| |||| || | ||||||| |||||||||||| ||||    
T  6899974 tcccttccaatctgaagcattgttttgattattgttctttatttccaaagggctatgagtttgagaagggtgaagtaatcaagctttggatggcagaagg 6899875  T
Q  118 tttgctaaag------ggaatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaatcagctgtt 211  Q
    |||||| |||      |||| || ||||| ||||||||||||||||||| |||| ||||| ||||||||||||||| | |||||||| |||||| |  ||    
T  6899874 tttgctgaagtgttgcggaagagacaaaagtgaagaagagttgggtaatgaattcttcaacgatctagtgtcaataacatttttccagcaatcaacaatt 6899775  T
Q  212 atgccattctgggctggtaagtaccatttcatcatgcatgat 253  Q
    |||||||| ||||||||||| ||| | |||||||||||||||    
T  6899774 atgccattatgggctggtaaatactacttcatcatgcatgat 6899733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 7749888 - 7749653
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||||||| ||||||||| |||||| |||||||||||||| ||||| ||||| ||||||||||| |||  ||| |||||||| |||||||||||| ||||    
T  7749888 tcccttccaatctgaagcgttgttttgcttattgttctatatttccaaagggctatgagtttgagaagcgtgggttaatcaagctttggatggcagaagg 7749789  T
Q  118 tttgctaaa------gggaatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaatcagctgtt 211  Q
     ||||||||      ||||| || ||||| ||||||| ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||    |    
T  7749788 cttgctaaagtgttggggaagagacaaaactgaagaacagttgggtaatgaattcttcaattatctagtgtcaatatcgtttttccaacaatcagtaact 7749689  T
Q  212 atgccattctgggctggtaagtaccatttcatcatg 247  Q
    ||||| || ||||||||||| ||| | |||||||||    
T  7749688 atgcctttatgggctggtaaatactacttcatcatg 7749653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 6591496 - 6591737
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||| ||| ||||||||| |||||| |||||||||||||| ||||||||||| ||||||||||| |||| || ||||||||| |||||||||||| ||||    
T  6591496 tcccatccaatctgaagcgttgttttgcttattgttctatatttcccaagggctatgagtttgagaagggtgaattaatcaagctttggatggcagaagg 6591595  T
Q  118 tttgctaaa------gggaatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaatcagctgtt 211  Q
     ||||||||      || || |  ||||| ||||||| ||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||||    |    
T  6591596 cttgctaaagtgttgggaaagacacaaaagtgaagaaaagttgggcaatgaattcttcaatcatctagtgtcaatatcgtttttccaacaatcagtaact 6591695  T
Q  212 atgccattctgggctggtaagtaccatttcatcatgcatgat 253  Q
    |||||||| |||||||| ||| || | |||||||||||||||    
T  6591696 atgccattatgggctggcaagcactacttcatcatgcatgat 6591737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 27 - 206
Target Start/End: Complemental strand, 6916978 - 6916793
Alignment:
Q  27 atctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaaggtttgctaaa 126  Q
    |||||||||||||||| ||||| ||||| || ||||||||||| ||||||||||| |||| || ||||||||| |||||||||||| |||||||||| ||    
T  6916978 atctgaagcattgttttgcttactgttccatatttcccaagggctatgagtttgagaagggtgaattaatcaagctttggatggcagaaggtttgctgaa 6916879  T
Q  127 g------ggaatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaatcag 206  Q
    |      |||| || ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||| |||||    
T  6916878 gtgttgtggaagagacaaaagtgaagaagagttgggtaatgaatttttcaatgatctagtgtcaatatcatttttccaacgatcag 6916793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 6882390 - 6882149
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||||||| ||||||||| |||||| |||||||||||||| ||||||||||| |||||| |||| |||| || | |||| ||||||||||||||| ||||    
T  6882390 tcccttccaatctgaagcgttgttttgcttattgttctatatttcccaagggctatgagcttgagaagggtgaactaattaaactttggatggcagaagg 6882291  T
Q  118 tttgctaaaggg------aatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaatcagctgtt 211  Q
    |||| | ||| |      || || |||||  ||| ||||||| |||||| |||| |||||| || | ||||||||||| ||||||||||||||||   ||    
T  6882290 tttgttgaagtgtcacaaaagagacaaaagcgaacaagagttaggtaatgaattcttcaatcatttggtgtcaatatcttttttccaacaatcagtaatt 6882191  T
Q  212 atgccattctgggctggtaagtaccatttcatcatgcatgat 253  Q
    |||||||| |||||||  || ||| | ||| |||||||||||    
T  6882190 atgccattatgggctgacaaatactacttcgtcatgcatgat 6882149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 6142172 - 6142070
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||||||  |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||| || ||||||||| |||||||||||| ||||    
T  6142172 tcccttctgatctgaagcattgttttgcttattgttctatatttcccaagggctatgagtttgagaagggtgaattaatcaagctttggatggcagaagg 6142073  T
Q  118 ttt 120  Q
    |||    
T  6142072 ttt 6142070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 6722237 - 6722422
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||||||| ||||||||| |||||| |||||||||||||| ||||||||||| ||||||||||| |||  || | |||| || ||||||||| || |||     
T  6722237 tcccttccgatctgaagcgttgttttgcttattgttctatatttcccaagggctatgagtttgagaagagtgaactaattaagctttggatgacagaaga 6722336  T
Q  118 tttgctaaag------ggaatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttcc 197  Q
    |||| | |||      |||| || ||||| |||| |||||||||||||| |||| ||  || |||||||||||||||| |||||||    
T  6722337 tttgttgaagtgttgcggaagagacaaaagtgaacaagagttgggtaatgaattctttgatcatctagtgtcaatatcatttttcc 6722422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 8569116 - 8569219
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||||||| |||| |||| |||||| || |||||||| || ||||||||||||||||| |||||||| |||| ||| ||||| |||||||||||| ||||    
T  8569116 tcccttccaatctcaagcgttgttttgcctattgttcaatttttcccaagggttatgaatttgaaaaagatgaattgatcaagctttggatggcagaagg 8569215  T
Q  118 tttg 121  Q
    ||||    
T  8569216 tttg 8569219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 6142039 - 6141931
Alignment:
Q  145 agaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaatcagctgttatgccattctgggctggtaagtaccatttcatc 244  Q
    ||||||||| |||||| |||| ||| || |||||||||||||||| ||||||||||||||||   |||||||||| ||| ||||||||||| | ||||      
T  6142039 agaagagttaggtaatgaattcttcgattatctagtgtcaatatcatttttccaacaatcagtaattatgccattatggtctggtaagtactacttcact 6141940  T
Q  245 atgcatgat 253  Q
    |||||||||    
T  6141939 atgcatgat 6141931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 7587733 - 7587543
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||| ||| |||| |||| |||||| || | |||||| || ||||||||||||||||  |||||||| |||| ||| ||||| |||||||||||| ||||    
T  7587733 tcccatccaatctaaagcgttgttttgccttttgttcaatatttcccaagggttatgtatttgaaaaagatgaattgatcaagctttggatggcagaagg 7587634  T
Q  118 tttgctaaa------gggaatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaa 202  Q
    |||||| ||       |||| || ||||| ||||||||||||||||||| |||| ||  ||||||||| ||| || || ||||| ||||||    
T  7587633 tttgctgaaatgttgcggaagagacaaaagtgaagaagagttgggtaatgaattcttggatgatctagagtccatttcattttttcaacaa 7587543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 6520333 - 6520436
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||||||| |||| |||| |||||| || ||||||||||| ||||||||||||||| | ||| |||| |||  ||| ||||| |||||||||||| ||||    
T  6520333 tcccttccaatctaaagcgttgttttgcatattgttctatttttcccaagggttataaatttaaaaaagataaattgatcaagctttggatggcagaagg 6520432  T
Q  118 tttg 121  Q
    ||||    
T  6520433 tttg 6520436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 6265577 - 6265336
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    ||||| || ||||||||| |||||| |||| ||| ||||   ||||||||||||||||||||||  ||| || ||||||||  |||||||||||| ||||    
T  6265577 tccctcccaatctgaagcgttgttttgcttgttggtctaatcttcccaagggttatgagtttgaggagggtgaattaatcaggctttggatggcagaagg 6265478  T
Q  118 tttgctaaa------gggaatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaatcagctgtt 211  Q
    |||| ||||       |||| |  |||||   |||||||||| || ||| |||| ||| || | ||||||||||| || ||||||||||||||||   |     
T  6265477 tttgttaaattgttgcggaagaaacaaaagcaaagaagagttagggaatgaattcttcgatcaactagtgtcaatgtcatttttccaacaatcagtattg 6265378  T
Q  212 atgccattctgggctggtaagtaccatttcatcatgcatgat 253  Q
    |||||||| ||| | ||||||| | | || ||||||||||||    
T  6265377 atgccattatggaccggtaagtgctactttatcatgcatgat 6265336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 199
Target Start/End: Complemental strand, 6947125 - 6946940
Alignment:
Q  20 ccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaaggtt 119  Q
    |||||| ||| ||||| |||||| || ||||| || || |||||||||||||||   |||||||| |||| ||| ||||| |||||||||||| ||||||    
T  6947125 ccttccaatcggaagcgttgttttgcctattgctccatttttcccaagggttatacatttgaaaaagatgaattgatcaagctttggatggcagaaggtt 6947026  T
Q  120 tgctaaag------ggaatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaa 199  Q
    || | |||       ||| || ||||| |||||||||||| |||||| || | |||| |||||| | |||||| ||||||||||||    
T  6947025 tgttgaagtgttgcagaagagacaaaagtgaagaagagttaggtaatgaaattttcagtgatcttgagtcaatttcgtttttccaa 6946940  T

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Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 8589587 - 8589485
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    ||||||||  ||| |||||||| ||  |||||||||| || ||||||||||||||||| |||||||| | || ||| ||||| || ||||||||| ||||    
T  8589587 tcccttccattctaaagcattgcttttcttattgttccatttttcccaagggttatgaatttgaaaaaggtgaattgatcaagctctggatggcagaagg 8589488  T
Q  118 ttt 120  Q
    |||    
T  8589487 ttt 8589485  T

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Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 8471422 - 8471317
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||||||  |||||||||  ||||| || || || ||||| ||||| ||||||| ||||||||| | ||||| ||| ||||| |||||||||||| ||||    
T  8471422 tcccttctaatctgaagcgctgttttgcctactgctctatatttcctaagggttttgagtttgacagggatgaattgatcaagctttggatggcagaagg 8471323  T
Q  118 tttgct 123  Q
    ||||||    
T  8471322 tttgct 8471317  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 5267786 - 5267724
Alignment:
Q  143 gaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaatca 205  Q
    ||||||||| |||||||| |||||||  |||||||||||||||| || |||||||| ||||||    
T  5267786 gaagaagagctgggtaatcaattattagatgatctagtgtcaatttcatttttccagcaatca 5267724  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 6839107 - 6839180
Alignment:
Q  50 tgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaaggtttgct 123  Q
    |||||| | ||||| | ||||| ||||||||| | ||||| ||| ||||| |||||||||||| ||||||||||    
T  6839107 tgttctgtatttcctaggggttttgagtttgacagggatgaattgatcaagctttggatggcagaaggtttgct 6839180  T

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Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 18 - 253
Target Start/End: Original strand, 35140515 - 35140756
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||||||| |||||||||||||||| || |||| |||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||| || ||||    
T  35140515 tcccttccaatctgaagcattgttttgcatattattctatatttcccaagggttatgagtttgaaaatgatggattaatcaagctttggatgacagaagg 35140614  T
Q  118 tttgctaaaggg------aatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaatcagctgtt 211  Q
    ||||||||||||      |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||  ||    
T  35140615 tttgctaaagggttgggaaatagccaaaaatgaagaagagttgggtaataaattcttcaatgatctagtgtcaatgtcgtttttccaaaaatcagcaatt 35140714  T
Q  212 atgccattctgggctggtaagtaccatttcatcatgcatgat 253  Q
     ||||||||||||||||||||| | |||||||| ||||||||    
T  35140715 ctgccattctgggctggtaagtgctatttcatcgtgcatgat 35140756  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 6573466 - 6573660
Alignment:
Q  18 tcccttcctatctgaagcattgtttagcttattgttctatgtttcccaagggttatgagtttgaaaaggatggattaatcaaactttggatggcacaagg 117  Q
    |||||||| |||| |||| |||||| || |||||||| || ||||||||||||||| | |||||||| |||| ||| ||||| |||||||||||  ||||    
T  6573466 tcccttccaatctaaagcgttgttttgcatattgttccatatttcccaagggttataaatttgaaaaagatgaattgatcaacctttggatggctgaagg 6573565  T
Q  118 tttgctaaa------gggaatagccaaaaatgaagaagagttgggtaataaattattcaatgatctagtgtcaatatcgtttttccaacaatcag 206  Q
    |||||| ||       |||| || ||||| |||| |||||||||||||| |||| ||  ||||||||| ||| || || ||||||||||||||||    
T  6573566 tttgctgaaatgttgcggaagagacaaaagtgaacaagagttgggtaatgaattcttggatgatctagagtccatttcatttttccaacaatcag 6573660  T

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