View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_43 (Length: 260)
Name: NF19271_low_43
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 8692621 - 8692852
Alignment:
| Q |
14 |
tcaaatctttgattgtcacaatgtgaacattaaaggtaaataaattttattttgttagatgaaattagaacaattctatcaagatgaagtttctttcatt |
113 |
Q |
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| T |
8692621 |
tcaaatctttgattgtcacaatgtgaacattaaaggtaaataaattttattttgttagatgaaattagaacaattctatcaagatgaagtttctttcatt |
8692720 |
T |
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| Q |
114 |
gtaagttgcatcattgtaaggccatgtgatttttatctgtgtgtatttgatcatcatgatgaaattatttaaacataaaagtgtcttgaagcagccatan |
213 |
Q |
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| T |
8692721 |
gtaagttgcatcattgtaaggccatgtgattttcatctgtgtgtatttgatcatcatgatgaaattatttaaacataaaagtgtcttgaagcagccatat |
8692820 |
T |
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| Q |
214 |
nnnnnnagtacatccaactccatgatatcttt |
245 |
Q |
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| T |
8692821 |
ttttttagtacatccaactccatgatatcttt |
8692852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 8707631 - 8707778
Alignment:
| Q |
30 |
cacaatgtgaacattaaaggtaaataaattttattttgttagatgaaattagaacaattctatcaagatgaagtttctttcattgtaagttgcatcattg |
129 |
Q |
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| T |
8707631 |
cacaatgtgaatattgaaggtaaataaattt-attttgtttgatgaatttagaatgtctctttcaagacgaactttgtttcactgtaagttgcatcattg |
8707729 |
T |
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| Q |
130 |
taaggccatgtgatttttatctgtgtgtatttgatcatcatgatgaaatt |
179 |
Q |
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| T |
8707730 |
taaggccatgtgatttctatct-agtgtatctcatcatcatgatgaaatt |
8707778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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