View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_46 (Length: 252)
Name: NF19271_low_46
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_46 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 30119851 - 30120087
Alignment:
| Q |
16 |
atatcaccacaatttgtaaaatatactagaaagaagtccggatcaggacgtatagaaaaaacaagagtcttaatccaagatgaatacactgcatattctt |
115 |
Q |
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| T |
30119851 |
atatcaccacaatttgtaaaatatacaaggaagaagtccggatcaggacgtatagaaaaaacaagagtcttaatccaagatgaatgcactgcatattctt |
30119950 |
T |
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| Q |
116 |
gcattacccatatctccactacatccatgtccacaatccatgcactaataagcccatcaagcaccaacaaatcatattgtatagaataagtaacacaaaa |
215 |
Q |
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| T |
30119951 |
gcattacccatatctccactacatccatgtccacaatccatgcactaataagcccatcaagcaccaacaaatcatattgtatagaataagtaacacaaaa |
30120050 |
T |
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| Q |
216 |
atccttaggcagagctatctctgatattgtcgtttcc |
252 |
Q |
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| T |
30120051 |
atcctttggcagagctatctctgatattgtcgtttcc |
30120087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 191
Target Start/End: Complemental strand, 30165922 - 30165800
Alignment:
| Q |
69 |
agaaaaaacaagagtcttaatccaagatgaatacactgcatattcttgcattacccatatctccactacatccatgtccacaatccatgcactaataagc |
168 |
Q |
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| T |
30165922 |
agaaaaatcaagagtcgtagtccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagt |
30165823 |
T |
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| Q |
169 |
ccatcaagcaccaacaaatcata |
191 |
Q |
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| T |
30165822 |
ccatgaaataccaacaaatcata |
30165800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 43164671 - 43164732
Alignment:
| Q |
69 |
agaaaaaacaagagtcttaatccaagatgaatacactgcatattcttgcattacccatatct |
130 |
Q |
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| T |
43164671 |
agaaaaatcaaaagtcttggtccaagatgaatgcacagcgtattcttgcattacccatatct |
43164732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 41310993 - 41311054
Alignment:
| Q |
69 |
agaaaaaacaagagtcttaatccaagatgaatacactgcatattcttgcattacccatatct |
130 |
Q |
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| T |
41310993 |
agaaaaatcaaaagtcttagtccaagatgaatgtattgcgtattcttgcatcacccatatct |
41311054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 48863692 - 48863631
Alignment:
| Q |
67 |
atagaaaaaacaagagtcttaatccaagatgaatacactgcatattcttgcattacccatat |
128 |
Q |
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| T |
48863692 |
atagaaagcacaagagttttaatccaagatgaatgcactccgtattcttccatcacccatat |
48863631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 49040795 - 49040847
Alignment:
| Q |
76 |
acaagagtcttaatccaagatgaatacactgcatattcttgcattacccatat |
128 |
Q |
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| T |
49040795 |
acaagaattttaatccaagatgaatgcactccatattcttccatcacccatat |
49040847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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