View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19271_low_47 (Length: 251)

Name: NF19271_low_47
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19271_low_47
NF19271_low_47
[»] chr8 (11 HSPs)
chr8 (1-179)||(43539752-43539930)
chr8 (4-179)||(43539101-43539276)
chr8 (4-179)||(59548-59723)
chr8 (6-179)||(35675612-35675785)
chr8 (28-177)||(60168-60313)
chr8 (1-133)||(35178802-35178934)
chr8 (199-244)||(43539688-43539733)
chr8 (61-153)||(28524811-28524903)
chr8 (5-153)||(32898423-32898571)
chr8 (146-179)||(35676373-35676406)
chr8 (2-98)||(2552008-2552104)
[»] chr4 (9 HSPs)
chr4 (5-179)||(29980200-29980373)
chr4 (6-179)||(39267720-39267892)
chr4 (7-179)||(29978833-29979007)
chr4 (6-179)||(39268803-39268975)
chr4 (64-153)||(21623095-21623184)
chr4 (55-153)||(21621870-21621968)
chr4 (76-119)||(32244700-32244743)
chr4 (61-117)||(2786274-2786330)
chr4 (89-153)||(24753539-24753603)
[»] chr3 (12 HSPs)
chr3 (4-132)||(26652603-26652731)
chr3 (5-179)||(27823726-27823900)
chr3 (61-156)||(40206912-40207008)
chr3 (106-179)||(30270735-30270808)
chr3 (76-149)||(40205950-40206023)
chr3 (5-70)||(47118112-47118177)
chr3 (1-142)||(48572978-48573119)
chr3 (1-133)||(17700511-17700643)
chr3 (5-133)||(17701917-17702045)
chr3 (6-49)||(20464543-20464586)
chr3 (5-151)||(52318297-52318443)
chr3 (76-112)||(40317838-40317874)
[»] chr7 (13 HSPs)
chr7 (6-179)||(8484158-8484331)
chr7 (5-179)||(8077545-8077722)
chr7 (4-124)||(8075482-8075601)
chr7 (6-153)||(48646047-48646194)
chr7 (2-153)||(35727693-35727843)
chr7 (5-152)||(7258272-7258419)
chr7 (10-49)||(48788754-48788793)
chr7 (10-153)||(44333141-44333282)
chr7 (89-156)||(384934-385001)
chr7 (3-49)||(385693-385739)
chr7 (4-50)||(21062813-21062859)
chr7 (5-49)||(10899155-10899199)
chr7 (62-118)||(24844627-24844683)
[»] chr2 (9 HSPs)
chr2 (5-133)||(32766237-32766365)
chr2 (10-153)||(31091505-31091648)
chr2 (5-118)||(8420010-8420123)
chr2 (3-119)||(12746213-12746329)
chr2 (61-153)||(15441949-15442041)
chr2 (61-149)||(38853808-38853896)
chr2 (8-40)||(5428361-5428393)
chr2 (1-49)||(14705129-14705177)
chr2 (5-153)||(32764935-32765082)
[»] chr5 (11 HSPs)
chr5 (1-118)||(9538062-9538179)
chr5 (1-49)||(24900414-24900462)
chr5 (10-153)||(4592863-4593006)
chr5 (10-117)||(8074453-8074560)
chr5 (10-153)||(19182952-19183095)
chr5 (82-149)||(19271416-19271483)
chr5 (4-46)||(16978988-16979030)
chr5 (10-80)||(28591165-28591235)
chr5 (4-49)||(14891225-14891270)
chr5 (7-100)||(23772809-23772902)
chr5 (61-149)||(26327054-26327142)
[»] chr1 (5 HSPs)
chr1 (64-149)||(50107185-50107270)
chr1 (5-119)||(11060796-11060910)
chr1 (4-153)||(7945532-7945681)
chr1 (61-118)||(1001207-1001264)
chr1 (101-153)||(534517-534569)
[»] chr6 (1 HSPs)
chr6 (6-118)||(12676483-12676595)


Alignment Details
Target: chr8 (Bit Score: 159; Significance: 9e-85; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 43539930 - 43539752
Alignment:
Q  1 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 100  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  43539930 tttttgagtaaatagacactttggtccctgactttgcacctcgctgtcattttagtcccctactcaggataaactacaaaatagtccttgaatatgcaca 43539831  T
Q  101 tctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 179  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43539830 tctgttatcagtttagtccttaccgttaaaaacctatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 43539752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 4 - 179
Target Start/End: Original strand, 43539101 - 43539276
Alignment:
Q  4 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 103  Q
    |||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| | ||||    
T  43539101 ttgagtaaatagtcactttggtccctaactttgcacctcgctgtcactttagtccccgactcaggataaactacaaaatagtccctgaatgtgtatatct 43539200  T
Q  104 gttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 179  Q
    |||||||||||| ||||||||||||||||| | ||||||||   ||||||||||| ||||||||||||||||||||    
T  43539201 gttatcagtttaatccttaccgttaaaaaattctgttaactaccgatgtgtcaattatagggaccaaattgaaagt 43539276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 4 - 179
Target Start/End: Original strand, 59548 - 59723
Alignment:
Q  4 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 103  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||| | | ||||    
T  59548 ttgagtaaatagtcactttagtccctgactttacacctcgctgtcactttagtccctgactcaggataaactacaaaatagtccctgaatgggtagatct 59647  T
Q  104 gttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 179  Q
    || |||||||||||||||||  |||||||| |||||||||  ||||||||||||||||||||||||||||||||||    
T  59648 gtcatcagtttagtccttacaattaaaaaattatgttaaccgatgatgtgtcaatcatagggaccaaattgaaagt 59723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 35675612 - 35675785
Alignment:
Q  6 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 105  Q
    |||| |||||||| ||||||| |||||||||||||||||| ||| |||||||| | ||| |||||||||||||||||| || |||||| || ||||||||    
T  35675612 gagttaatagtcattttggtcgttgactttgcacctcgctatcactttagtcctcaacttaggataaactacaaaatattctttgaatatgtacatctgt 35675711  T
Q  106 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 179  Q
    |||||||| | ||||||||||||||||  | |||||| | ||||||||||||| |||| ||||||||| |||||    
T  35675712 tatcagttcaatccttaccgttaaaaatttctgttaattgatgatgtgtcaattatagagaccaaattaaaagt 35675785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 60313 - 60168
Alignment:
Q  28 ttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgtt 127  Q
    |||||||||||||||| ||||| ||| |||||    ||||||||||||||| |||||||| |||||||| | | ||||||||||| ||||| ||||| ||    
T  60313 ttgactttgcacctcgttgtcactttggtccc----tcaggataaactacagaatagtccctgaatgtgtagacctgttatcagtctagtctttaccttt 60218  T
Q  128 aaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaa 177  Q
    |||||  | ||||||||  |||||||||| ||||||||||||||||||||    
T  60217 aaaaatttctgttaactgctgatgtgtcattcatagggaccaaattgaaa 60168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 35178934 - 35178802
Alignment:
Q  1 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 100  Q
    |||| ||| |||||||||||||||||| ||||| ||||| |||||||||| || ||||| |||||||||| || ||||||  ||||| ||| | |||||     
T  35178934 ttttcgagcaaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcact 35178835  T
Q  101 tctgttatcagtttagtccttaccgttaaaaaa 133  Q
    || ||||||| |||||||| |  ||||||||||    
T  35178834 tccgttatcactttagtccctgacgttaaaaaa 35178802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 244
Target Start/End: Complemental strand, 43539733 - 43539688
Alignment:
Q  199 attaatgataaaaaaccaaataaagaatatttatcaccttcatctc 244  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  43539733 attaatgataaaaaaccaaaaaaagaatatttatcaccttcatctc 43539688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 28524811 - 28524903
Alignment:
Q  61 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    |||||||||| || |||||| || ||||||||||||||| || ||||||| |||||||  |  ||||||| || | |||||||| ||||||||    
T  28524811 gactcaggattaaatacaaagtaatccttgaatgtgcacttccgttatcattttagtctctgacgttaaataattttgttaactgatgatgtg 28524903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 32898571 - 32898423
Alignment:
Q  5 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 104  Q
    |||| ||||||||||||| |||| ||||| |||| ||| ||||||  |  ||||| |||| ||||| || ||||||  ||||| ||| | ||||| || |    
T  32898571 tgagcaaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccg 32898472  T
Q  105 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    |||||| |||||||| |  |||||||||| | |||||| | ||||||||    
T  32898471 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgtg 32898423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 35676406 - 35676373
Alignment:
Q  146 atgatgtgtcaatcatagggaccaaattgaaagt 179  Q
    |||||||||||||||||||||| |||||||||||    
T  35676406 atgatgtgtcaatcatagggactaaattgaaagt 35676373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 2552008 - 2552104
Alignment:
Q  2 ttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgca 98  Q
    ||||||||||||  ||| ||||||| ||||||||| || ||||||| ||   ||||   |||||||||| || |||||| || ||||||||||||||    
T  2552008 ttttgagtaaatgatcattttggtctttgactttgtacgtcgctgttatcaaagtctttgactcaggattaaatacaaagtaatccttgaatgtgca 2552104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 29980373 - 29980200
Alignment:
Q  5 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 104  Q
    ||||||||||||||||||| |||| |||||| ||||||||||||| |||||||||| ||||| |||||||||||||||||||| |||||||| | || ||    
T  29980373 tgagtaaatagtcactttgatcct-gactttacacctcgctgtcactttagtccccaactcaagataaactacaaaatagtccctgaatgtgtatatttg 29980275  T
Q  105 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 179  Q
    |||||||||||||| |||||||||||||| | ||||| ||  | |||||||||| ||||| |||||  |||||||    
T  29980274 ttatcagtttagtctttaccgttaaaaaattctgttacctacttatgtgtcaattataggaaccaatctgaaagt 29980200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 39267720 - 39267892
Alignment:
Q  6 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 105  Q
    ||||||||||||| |||  |||| |||||||||||||||||||| || |||| |||| | |||||||| ||||| | ||| | |||||||| ||||||||    
T  39267720 gagtaaatagtcattttattcct-gactttgcacctcgctgtcacttcagtcgccgattgaggataaaatacaataaagtgcctgaatgtgtacatctgt 39267818  T
Q  106 tatcagtttagtccttaccgttaaaaaacta-tgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 179  Q
    |||||||||||||||||||||| || |||||  ||||| | ||||| ||||||| |||||| |||||||||||||    
T  39267819 tatcagtttagtccttaccgtt-aataactaccgttaaatgatgatatgtcaataataggggccaaattgaaagt 39267892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 29978833 - 29979007
Alignment:
Q  7 agtaaatagtcactttggtccttgactttgcacctcgctgtcattttagt-ccccgactcaggataaactac-aaaatagtccttgaatgtgcacatctg 104  Q
    |||||||||||| |||||| | ||||||| ||| ||| ||||| |||||| |||||||| | ||| || ||| |||||||||  ||||  |  |||| ||    
T  29978833 agtaaatagtcattttggttcctgactttacacttcgttgtcactttagttccccgacttatgattaaataccaaaatagtctctgaaaatatacatttg 29978932  T
Q  105 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 179  Q
    ||||||||||| ||||||||||||||||  | |||||||||| ||||||| ||| | ||||||||||||||||||    
T  29978933 ttatcagtttaatccttaccgttaaaaatttttgttaactcacgatgtgttaattagagggaccaaattgaaagt 29979007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 39268975 - 39268803
Alignment:
Q  6 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 105  Q
    ||||||||| ||||||| || | ||| ||| || |||||||||| ||||||| ||||||| | ||||| ||||| | ||| | |||| ||| |  |||||    
T  39268975 gagtaaataatcactttagttcctgattttacatctcgctgtcactttagtctccgactctgaataaaatacaataaagttcctgaacgtgtatctctgt 39268876  T
Q  106 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 179  Q
    ||||||||||||  ||||||||| |||||| |||||  |  ||||||||||||| || ||||||||||||||||    
T  39268875 tatcagtttagtttttaccgtta-aaaactctgttacatggtgatgtgtcaatcctaaggaccaaattgaaagt 39268803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 21623184 - 21623095
Alignment:
Q  64 tcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    ||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||    ||||||| || |||||||||| ||||||||    
T  21623184 tcaggattaaatacaaaatagtccttgaatgtgcacttctgttatcactttagtccccgacgttaaataattatgttaactaatgatgtg 21623095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 21621870 - 21621968
Alignment:
Q  55 gtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    ||||| |||||||||| || |||||||||||| |||||||||||| || ||||||| |||||||| |   |||||| || |||||||||| ||||||||    
T  21621870 gtccctgactcaggattaaatacaaaatagtcattgaatgtgcacttccgttatcactttagtccctgatgttaaataattatgttaactgatgatgtg 21621968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 32244743 - 32244700
Alignment:
Q  76 acaaaatagtccttgaatgtgcacatctgttatcagtttagtcc 119  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||    
T  32244743 acaaagtagtccttgaatgtgcacatccgttatcactttagtcc 32244700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 117
Target Start/End: Original strand, 2786274 - 2786330
Alignment:
Q  61 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagt 117  Q
    |||||||||| || |||||| || ||||||||||||||| || ||||||| ||||||    
T  2786274 gactcaggattaaatacaaattactccttgaatgtgcacttccgttatcattttagt 2786330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 24753603 - 24753539
Alignment:
Q  89 tgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    ||||||||||| |||||||||| ||||||| ||  ||||||| || | |||||||| ||||||||    
T  24753603 tgaatgtgcacttctgttatcactttagtcattcgcgttaaataattttgttaactgatgatgtg 24753539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 26652731 - 26652603
Alignment:
Q  4 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 103  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||| ||||||||| |||| |||||||| ||||||||||||| |||||||| |  |||    
T  26652731 ttgagtaaatagtcacttgggtccctgactttgcatctcgctgtcactttagtccctgacttaggataaaatacaaaatagtccatgaatgtgtatctct 26652632  T
Q  104 gttatcagtttagtccttaccgttaaaaa 132  Q
    |||||||||||||||||||| ||||||||    
T  26652631 gttatcagtttagtccttactgttaaaaa 26652603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 27823726 - 27823900
Alignment:
Q  5 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 104  Q
    |||| ||||||||| |||  ||||||| ||| |||||  ||||||||||| || ||||  ||||||||| ||||| | |||| ||||||||  |  ||||    
T  27823726 tgaggaaatagtcattttaatccttgattttacacctaactgtcattttaatctccgatccaggataaaatacaataaagtctttgaatgtctatctctg 27823825  T
Q  105 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 179  Q
    ||||| ||||||| ||||||||||||||  | |||||| |  |||||||||||| ||| ||| ||||||||||||    
T  27823826 ttatcggtttagttcttaccgttaaaaacttctgttaaatggtgatgtgtcaattataaggatcaaattgaaagt 27823900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 40207008 - 40206912
Alignment:
Q  61 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagt-ccttaccgttaaaaaactatgttaactcatgatgtgtca 156  Q
    |||||| ||| || || ||| |||||||||||||||||  || |||||||||||||| ||||| |||||||||| |||||||||| |||| ||||||    
T  40207008 gactcatgattaagtataaattagtccttgaatgtgcatttccgttatcagtttagtcccttaacgttaaaaaattatgttaactgatgaggtgtca 40206912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 30270735 - 30270808
Alignment:
Q  106 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 179  Q
    |||||||||| || ||||||||||| |  | ||||||||  |||||||||||||||| |||||||||| |||||    
T  30270735 tatcagtttaatctttaccgttaaacacttctgttaactggtgatgtgtcaatcataaggaccaaattaaaagt 30270808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Original strand, 40205950 - 40206023
Alignment:
Q  76 acaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 149  Q
    ||||| |||||  ||||||||||| || ||||||||||||||| ||  |||||||||| |||||||||| ||||    
T  40205950 acaaagtagtctctgaatgtgcacttccgttatcagtttagtcattggcgttaaaaaattatgttaactaatga 40206023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 47118177 - 47118112
Alignment:
Q  5 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggat 70  Q
    |||| |||| |||||||| |||| ||||| ||||||||| |||||| | |||||||||||||||||    
T  47118177 tgagcaaatggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggat 47118112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 48572978 - 48573119
Alignment:
Q  1 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 100  Q
    ||||| || |||||||||||||||||| ||||| ||||||||| | |||  |  ||||| |||||||||| || ||||||  || |  ||| | |||||     
T  48572978 ttttttagcaaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcact 48573077  T
Q  101 tctgttatcagtttagtccttaccgttaaaaaactatgttaa 142  Q
    || ||||||| ||||||||||  |||||||||| | ||||||    
T  48573078 tccgttatcactttagtccttgacgttaaaaaaatttgttaa 48573119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 17700511 - 17700643
Alignment:
Q  1 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 100  Q
    |||| ||| ||||||||||||| ||| |||||| ||||||||| |||||  |  || || |||||||||| || ||||||  ||||| ||| | |||||     
T  17700511 ttttagagcaaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcact 17700610  T
Q  101 tctgttatcagtttagtccttaccgttaaaaaa 133  Q
    || ||||||| |||||||| |  ||||||||||    
T  17700611 tccgttatcactttagtccctgacgttaaaaaa 17700643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 17702045 - 17701917
Alignment:
Q  5 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 104  Q
    |||||||||||||||||| |||  ||| | |||| ||||||||||| |  ||||| |||||| ||| || ||||||  ||||| ||| | ||||| || |    
T  17702045 tgagtaaatagtcactttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccg 17701946  T
Q  105 ttatcagtttagtccttaccgttaaaaaa 133  Q
    |||||| |||||||| |  ||||||||||    
T  17701945 ttatcactttagtccctgacgttaaaaaa 17701917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Complemental strand, 20464586 - 20464543
Alignment:
Q  6 gagtaaatagtcactttggtccttgactttgcacctcgctgtca 49  Q
    ||||||||||||||||| |||||||||| ||||||| |||||||    
T  20464586 gagtaaatagtcactttagtccttgactctgcaccttgctgtca 20464543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 52318443 - 52318297
Alignment:
Q  5 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 104  Q
    |||| |||||||||||||||||  ||||| ||||| |||||||||  |   |||| |||||||||| || ||||||  ||||| ||| | ||||| ||||    
T  52318443 tgagcaaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcacttctg 52318344  T
Q  105 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatg 151  Q
     ||| | |||||||| |  |||||||||| | |||||| | ||||||    
T  52318343 atattactttagtccctgacgttaaaaaaatctgttaagtgatgatg 52318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 40317838 - 40317874
Alignment:
Q  76 acaaaatagtccttgaatgtgcacatctgttatcagt 112  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  40317838 acaaagtagtccttgaatgtgcacttctgttatcagt 40317874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 8484331 - 8484158
Alignment:
Q  6 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 105  Q
    |||||||||||||||||||||  ||| ||||||||||| ||||| | |||| ||||||| | ||||||||| |||||||||| |||||||| | || |||    
T  8484331 gagtaaatagtcactttggtctctgattttgcacctcgttgtcactctagttcccgacttaagataaactataaaatagtccatgaatgtgtaaatttgt 8484232  T
Q  106 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 179  Q
    |||||||||||| |||||||||||||   | |||||||    |||||||||||||||||||| |||||||||||    
T  8484231 tatcagtttagtacttaccgttaaaattttctgttaaccgcagatgtgtcaatcatagggactaaattgaaagt 8484158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 8077722 - 8077545
Alignment:
Q  5 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 104  Q
    |||||||||||||| ||||||||   ||||| ||||||| ||||| ||||||| ||||||||||||||| || |||||| |   |||||||| | |||||    
T  8077722 tgagtaaatagtcattttggtccccaactttacacctcgttgtcactttagtctccgactcaggataaattataaaataatttctgaatgtgtagatctg 8077623  T
Q  105 ttatcagtttagtcctt---accgttaaaaaactatgttaactcatgatgtgtcaatcatagggaccaaattgaaagt 179  Q
    ||||| |||||||||||   |||||| ||||| |||||||||   ||||||||||||||||| ||||||||| |||||    
T  8077622 ttatctgtttagtccttataaccgttgaaaaattatgttaacgactgatgtgtcaatcatagagaccaaattaaaagt 8077545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 124
Target Start/End: Original strand, 8075482 - 8075601
Alignment:
Q  4 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 103  Q
    |||||||||||||||||| ||||||||||||| ||||  | ||| | ||||||| |||||| | |||||||||||||||| |||||||||||| | ||||    
T  8075482 ttgagtaaatagtcactt-ggtccttgactttacaccatgttgttactttagtctccgacttatgataaactacaaaataatccttgaatgtgtagatct 8075580  T
Q  104 gttatcagtttagtccttacc 124  Q
    |||||||||||||||||||||    
T  8075581 gttatcagtttagtccttacc 8075601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 48646047 - 48646194
Alignment:
Q  6 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 105  Q
    |||||||||||||||||||||| ||||| |||||||||||||||  |  ||||| |||||||||| || ||||||  ||||| ||| | | ||| || ||    
T  48646047 gagtaaatagtcactttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgt 48646146  T
Q  106 tatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    ||||| |||||||  |  |||||||||| ||| |||| | ||||||||    
T  48646147 tatcactttagtctctgtcgttaaaaaaatatattaagtgatgatgtg 48646194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 2 - 153
Target Start/End: Original strand, 35727693 - 35727843
Alignment:
Q  2 ttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacat 101  Q
    ||||||| ||| |||||||||| ||| ||||| |||||||||||||||  |  ||||| |||||||||| || || |||  ||||  ||| | |||||||    
T  35727693 ttttgagcaaacagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacat 35727792  T
Q  102 ctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    | ||||||| ||||||||| | ||||||||| || |||||| | ||||||||    
T  35727793 ccgttatcactttagtcctga-cgttaaaaatctctgttaagtgatgatgtg 35727843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 7258272 - 7258419
Alignment:
Q  5 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 104  Q
    |||| |||||||||||||||||| ||||| | ||||||| |||||  |  |||||  ||||||||| || ||||||  ||||  ||| | ||||| ||||    
T  7258272 tgagcaaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctg 7258371  T
Q  105 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgt 152  Q
    |||||| |||||||| |  |||||||||| | |||||| | |||||||    
T  7258372 ttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 48788793 - 48788754
Alignment:
Q  10 aaatagtcactttggtccttgactttgcacctcgctgtca 49  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  48788793 aaatagtcactttgatccttgactttgcacctcgctgtca 48788754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 44333141 - 44333282
Alignment:
Q  10 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 109  Q
    |||||||||||||||||| ||||| |||||||||||||||  |  ||||| |||||| ||| || ||||||  ||||  ||| | ||||| || ||||||    
T  44333141 aaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgttatc 44333240  T
Q  110 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    |   ||||||||  |||||||||| | |||||| | ||||||||    
T  44333241 a--ctagtccttgacgttaaaaaaatctgttaagtgatgatgtg 44333282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 384934 - 385001
Alignment:
Q  89 tgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtgtca 156  Q
    ||||||||||| || ||| |||||||||||  ||||||||||||| ||||||| || |||| ||||||    
T  384934 tgaatgtgcacttccgttctcagtttagtctctaccgttaaaaaattatgttagctaatgaggtgtca 385001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 385739 - 385693
Alignment:
Q  3 tttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 49  Q
    ||||||||||| ||||||||||||||||||| |||| |||| |||||    
T  385739 tttgagtaaatggtcactttggtccttgactctgcatctcgttgtca 385693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 21062813 - 21062859
Alignment:
Q  4 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcat 50  Q
    ||||| |||| |||||||| |||| ||||||||||||||||||||||    
T  21062813 ttgagaaaatggtcactttagtccctgactttgcacctcgctgtcat 21062859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 10899199 - 10899155
Alignment:
Q  5 tgagtaaatagtcactttggtccttgactttgcacctcgctgtca 49  Q
    ||||||||| || |||||||||| ||||| |||||||||||||||    
T  10899199 tgagtaaattgttactttggtccctgactctgcacctcgctgtca 10899155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 24844627 - 24844683
Alignment:
Q  62 actcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtc 118  Q
    ||||||||| || |||||| ||||| |||||||||||| ||  ||||||||||||||    
T  24844627 actcaggattaaatacaaagtagtcattgaatgtgcacttccattatcagtttagtc 24844683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 32766365 - 32766237
Alignment:
Q  5 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 104  Q
    |||| |||||||||||||||||| ||||| ||||||||| |||||  |  ||||| |||||||||| || ||||||  ||||| ||| | ||||| || |    
T  32766365 tgagcaaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccg 32766266  T
Q  105 ttatcagtttagtccttaccgttaaaaaa 133  Q
    |||||| ||||||||||  ||||||||||    
T  32766265 ttatcactttagtccttgacgttaaaaaa 32766237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 10 - 153
Target Start/End: Complemental strand, 31091648 - 31091505
Alignment:
Q  10 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 109  Q
    |||||||||||||||||| ||||| ||||||| |||||||  |  ||||| |||||||||| || ||||||  ||||| ||| | ||||| || ||||||    
T  31091648 aaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 31091549  T
Q  110 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    | |||||||  |  |||||||||| |||||||| | ||||||||    
T  31091548 actttagtctctgacgttaaaaaaatatgttaagtgatgatgtg 31091505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 8420010 - 8420123
Alignment:
Q  5 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 104  Q
    ||||||||| ||||||||||||| ||||| ||||  |||| ||||     ||||| || ||| ||| || |||||| |||||| ||||||||||| ||||    
T  8420010 tgagtaaatggtcactttggtccctgactctgcatttcgcggtcacaaatgtccctgagtcaagattaaatacaaagtagtccctgaatgtgcacttctg 8420109  T
Q  105 ttatcagtttagtc 118  Q
    ||||||||||||||    
T  8420110 ttatcagtttagtc 8420123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 12746329 - 12746213
Alignment:
Q  3 tttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatc 102  Q
    ||||||||||| ||||||||||| ||||||| |||||||||| ||| |    || || |||||||||| || |||||| |||| | ||||||||| | ||    
T  12746329 tttgagtaaatggtcactttggttcttgactctgcacctcgcagtcttaaaggttcctgactcaggattaaatacaaagtagttcctgaatgtgcccttc 12746230  T
Q  103 tgttatcagtttagtcc 119  Q
     ||||||| ||||||||    
T  12746229 cgttatcactttagtcc 12746213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 15442041 - 15441949
Alignment:
Q  61 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    |||||||||| || |||||| |||||||||||||||||| | | |||||| |||||||  ||  |||||| || | |||||||| ||||||||    
T  15442041 gactcaggattaaatacaaagtagtccttgaatgtgcacttttattatcactttagtctctagtgttaaataattttgttaactgatgatgtg 15441949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 38853808 - 38853896
Alignment:
Q  61 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 149  Q
    |||||||||| || |||||| |||||| | ||||||||| || ||||||| |||||||  |  ||||||| || |||||||||||||||    
T  38853808 gactcaggattaaatacaaagtagtccctaaatgtgcacttccgttatcaatttagtcactgacgttaaataattatgttaactcatga 38853896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 5428361 - 5428393
Alignment:
Q  8 gtaaatagtcactttggtccttgactttgcacc 40  Q
    |||||| ||||||||||||||||||||||||||    
T  5428361 gtaaatggtcactttggtccttgactttgcacc 5428393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 14705177 - 14705129
Alignment:
Q  1 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 49  Q
    |||| ||| ||||||||||||||||||  |||| |||||||||||||||    
T  14705177 ttttagagcaaatagtcactttggtcccggactctgcacctcgctgtca 14705129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 153
Target Start/End: Original strand, 32764935 - 32765082
Alignment:
Q  5 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 104  Q
    |||||||||||||||||| |||| ||| | |||| || | |||||| |  ||| | |||||||||| || ||||||  ||||| ||| | ||||| || |    
T  32764935 tgagtaaatagtcactttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcacttccg 32765034  T
Q  105 ttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    |||||| |||| ||| |  |||||||||| |||||||| | ||||||||    
T  32765035 ttatcactttaatccctgacgttaaaaaa-tatgttaagtgatgatgtg 32765082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 9538179 - 9538062
Alignment:
Q  1 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 100  Q
    |||| ||| |||||||||||||||||| ||||| |||| |||| |||||| |  ||||| |||||||||| || ||||||  ||||  ||| |||||||     
T  9538179 ttttagagcaaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcact 9538080  T
Q  101 tctgttatcagtttagtc 118  Q
    || ||||||| |||||||    
T  9538079 tccgttatcattttagtc 9538062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24900462 - 24900414
Alignment:
Q  1 tttttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 49  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||||||    
T  24900462 tttttgagcaaatagtcactttggtccctgactctgcacctcgctgtca 24900414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 4592863 - 4593006
Alignment:
Q  10 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 109  Q
    ||||||||||||| |||| ||| | || | ||||||||||  | |||||| |||||| ||| || ||||||  ||||| ||| | ||||| || ||||||    
T  4592863 aaatagtcactttagtccctgattatgtagctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatc 4592962  T
Q  110 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    | |||||||| |  |||||||||| | |||||| | ||||||||    
T  4592963 actttagtccctgacgttaaaaaaatctgttaagtgatgatgtg 4593006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 8074453 - 8074560
Alignment:
Q  10 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 109  Q
    ||||||||||||| |||| ||| | |||| ||||||||||  | |||||| |||||||||| || ||||||  ||||| ||| | ||||| || ||||||    
T  8074453 aaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttatc 8074552  T
Q  110 agtttagt 117  Q
    | ||||||    
T  8074553 actttagt 8074560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 19182952 - 19183095
Alignment:
Q  10 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgttatc 109  Q
    ||||||| ||||| |  |||||||||||||||||||||||  |  ||| | |||||||||| || ||||||  ||| | ||| | | ||| || ||||||    
T  19182952 aaatagttactttagaacttgactttgcacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatc 19183051  T
Q  110 agtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    | |||||||||| |  |||||||| |||||||| | ||||||||    
T  19183052 actttagtccttgcgattaaaaaaatatgttaagtgatgatgtg 19183095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 19271416 - 19271483
Alignment:
Q  82 tagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 149  Q
    |||||||| ||||||||| || |||||||||||||||| |  |||||||||  |||||||||| ||||    
T  19271416 tagtcctttaatgtgcacttccgttatcagtttagtccatgacgttaaaaatttatgttaactaatga 19271483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 16978988 - 16979030
Alignment:
Q  4 ttgagtaaatagtcactttggtccttgactttgcacctcgctg 46  Q
    ||||||| ||||||||||| |||||||||||||||||| ||||    
T  16978988 ttgagtagatagtcactttagtccttgactttgcaccttgctg 16979030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 28591235 - 28591165
Alignment:
Q  10 aaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaa 80  Q
    |||||||||||||| ||| ||||| |||||||||||||||  |  ||||| |||||||||| || ||||||    
T  28591235 aaatagtcactttgatccctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaa 28591165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 14891270 - 14891225
Alignment:
Q  4 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtca 49  Q
    ||||| |||||||||||||||||| | ||| |||||||||||||||    
T  14891270 ttgagcaaatagtcactttggtccctcactctgcacctcgctgtca 14891225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 23772809 - 23772902
Alignment:
Q  7 agtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcaca 100  Q
    ||||||| ||||||||| ||  ||||||||||||||||| ||||   |||||| ||| || ||| || |||||| |||| | ||||||||||||    
T  23772809 agtaaatggtcactttgatctctgactttgcacctcgctatcataaaagtccctgacacaagattaaatacaaagtagttcctgaatgtgcaca 23772902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 26327142 - 26327054
Alignment:
Q  61 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 149  Q
    |||||||||| || || ||||||  ||||| |||||||| || || |||||||||||||||  |||||||||  | |||||||| ||||    
T  26327142 gactcaggattaaatataaaataacccttggatgtgcacttccgtaatcagtttagtccttgacgttaaaaatttctgttaactgatga 26327054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 50107270 - 50107185
Alignment:
Q  64 tcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtccttaccgttaaaaaactatgttaactcatga 149  Q
    ||||||| || ||||||||||||  ||||||||||| || ||||||| ||||||||||  ||||||| || |||||||||| ||||    
T  50107270 tcaggattaaatacaaaatagtctctgaatgtgcacttccgttatcactttagtccttggcgttaaataattatgttaactgatga 50107185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 11060910 - 11060796
Alignment:
Q  5 tgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctg 104  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||     ||||  ||||||  || || ||||||||||||| |||||| |||| |  |    
T  11060910 tgagtaaatggtcactttgatccttgactatgcacctcgctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcg 11060811  T
Q  105 ttatcagtttagtcc 119  Q
    |||||| ||||||||    
T  11060810 ttatcactttagtcc 11060796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 7945681 - 7945532
Alignment:
Q  4 ttgagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatct 103  Q
    ||||| ||||| ||| |||||||| ||||| |||||||||||||||  |  || || |||||||||| || ||||||  ||||  ||| | ||||| ||     
T  7945681 ttgagcaaataatcattttggtccctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttcc 7945582  T
Q  104 gttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    ||||||| |||||||| |  |||||||||| |||| ||| | ||||||||    
T  7945581 gttatcactttagtccctgacgttaaaaaaatatgctaagtgatgatgtg 7945532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 1001207 - 1001264
Alignment:
Q  61 gactcaggataaactacaaaatagtccttgaatgtgcacatctgttatcagtttagtc 118  Q
    ||||| |||| || |||||| |||||  ||||||||||| ||||||||||||||||||    
T  1001207 gactcgggattaaatacaaagtagtctctgaatgtgcacttctgttatcagtttagtc 1001264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 534569 - 534517
Alignment:
Q  101 tctgttatcagtttagtccttaccgttaaaaaactatgttaactcatgatgtg 153  Q
    |||||||||| |||||||| ||||||||||||| | |||||| | ||||||||    
T  534569 tctgttatcactttagtccctaccgttaaaaaaatctgttaagttatgatgtg 534517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 118
Target Start/End: Complemental strand, 12676595 - 12676483
Alignment:
Q  6 gagtaaatagtcactttggtccttgactttgcacctcgctgtcattttagtccccgactcaggataaactacaaaatagtccttgaatgtgcacatctgt 105  Q
    |||||||||||||||||| |   ||||| ||||||||| |||||   | ||| | | |||||||| || |||||| |||||  | ||||||||| | |||    
T  12676595 gagtaaatagtcactttgatatctgactctgcacctcgttgtcacaatggtctctgtctcaggattaaatacaaagtagtctctaaatgtgcacttttgt 12676496  T
Q  106 tatcagtttagtc 118  Q
    |||||||||||||    
T  12676495 tatcagtttagtc 12676483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University