View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19271_low_49 (Length: 250)

Name: NF19271_low_49
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19271_low_49
NF19271_low_49
[»] chr8 (5 HSPs)
chr8 (13-190)||(41014326-41014503)
chr8 (194-250)||(41015105-41015161)
chr8 (183-244)||(11142697-11142758)
chr8 (189-247)||(1662596-1662654)
chr8 (181-250)||(1605324-1605393)
[»] chr1 (6 HSPs)
chr1 (183-248)||(4328841-4328906)
chr1 (182-248)||(35161947-35162013)
chr1 (181-250)||(41866976-41867045)
chr1 (189-244)||(29395464-29395519)
chr1 (189-248)||(30410864-30410923)
chr1 (189-250)||(28549373-28549434)
[»] chr3 (4 HSPs)
chr3 (187-248)||(55041523-55041584)
chr3 (189-248)||(4865120-4865179)
chr3 (189-222)||(30766075-30766108)
chr3 (188-220)||(46595821-46595853)
[»] chr7 (2 HSPs)
chr7 (189-248)||(13946647-13946706)
chr7 (183-220)||(20389908-20389945)
[»] chr6 (3 HSPs)
chr6 (183-220)||(31112468-31112505)
chr6 (183-218)||(6309211-6309246)
chr6 (188-220)||(4434986-4435018)
[»] scaffold0524 (1 HSPs)
scaffold0524 (183-218)||(5126-5161)
[»] chr4 (2 HSPs)
chr4 (187-250)||(34703765-34703828)
chr4 (182-218)||(7131295-7131331)
[»] chr5 (1 HSPs)
chr5 (187-220)||(37720060-37720093)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 41014326 - 41014503
Alignment:
Q  13 aatataagacggtgatctaatcctaagaattttccacaaagtggtgatgacggcatagagctatttactcgattgttgcagacattggcagagtaagaaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41014326 aatataagacggtgatctaatcctaagaattttccacaaagtggtgatgacggcgtagagctatttactcgattgttgcagacattggcagagtaagaaa 41014425  T
Q  113 tagtcaattttgaatgaacacagtgtaaccctctttcaaatatccaactgacaaaaccaagggataacaaatccttat 190  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41014426 tagtcaattttgaatgaacacactgtaaccctctttcaaatatccacctgacaaaaccaagggataacaaatccttat 41014503  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 41015105 - 41015161
Alignment:
Q  194 tattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgat 250  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  41015105 tattatctaatcctaaagtacaatgcacataactatttcaaaactctaatccttgat 41015161  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 11142697 - 11142758
Alignment:
Q  183 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatc 244  Q
    |||||||||||||||||||||||||||| ||||||||||||||  ||| |||||||||||||    
T  11142697 atccttatccttattatctaatcctaaactacaatgcacataacaattgcaaaaccctaatc 11142758  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 1662654 - 1662596
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatcctt 247  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| ||||||||||||||||    
T  1662654 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatcctt 1662596  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 1605393 - 1605324
Alignment:
Q  181 aaatccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgat 250  Q
    ||||||||||| |||||||||||||||||| ||| ||||| | || ||||  ||||||||||||||||||    
T  1605393 aaatccttatcattattatctaatcctaaactacgatgcatacaactattgtaaaaccctaatccttgat 1605324  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 183 - 248
Target Start/End: Complemental strand, 4328906 - 4328841
Alignment:
Q  183 atccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttg 248  Q
    |||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||    
T  4328906 atccttatccttattatctaatcctaaagtacaatgcacacaactttttcaaaaccctaatccttg 4328841  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 35161947 - 35162013
Alignment:
Q  182 aatccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttg 248  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||  ||| |||||||||||||||||    
T  35161947 aatccttatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttg 35162013  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Original strand, 41866976 - 41867045
Alignment:
Q  181 aaatccttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgat 250  Q
    ||||||||||||||||| ||||||||||| |||||||||||| |||   |  ||||||||||||||||||    
T  41866976 aaatccttatccttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgat 41867045  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 29395519 - 29395464
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatc 244  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| |||||||||||||    
T  29395519 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatc 29395464  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 248
Target Start/End: Complemental strand, 30410923 - 30410864
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttg 248  Q
    |||||||||||||||| ||||| ||||||||||| ||  ||| |||||||||||||||||    
T  30410923 atccttattatctaattctaaactacaatgcacacaacaattgcaaaaccctaatccttg 30410864  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 28549434 - 28549373
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgat 250  Q
    ||||||||| ||||||||||| |||||||||||| |||   |  ||||||||||||||||||    
T  28549434 atccttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgat 28549373  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 55041584 - 55041523
Alignment:
Q  187 ttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttg 248  Q
    |||||||||||||||||||||||| ||||||||||| ||  ||| |||||||||||||||||    
T  55041584 ttatccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttg 55041523  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 4865120 - 4865179
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttg 248  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| |||||||||||||||||    
T  4865120 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttg 4865179  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 30766108 - 30766075
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcaca 222  Q
    |||||||||||||||||||||| |||||||||||    
T  30766108 atccttattatctaatcctaaactacaatgcaca 30766075  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 46595853 - 46595821
Alignment:
Q  188 tatccttattatctaatcctaaagtacaatgca 220  Q
    ||||||||||||||||||||||| |||||||||    
T  46595853 tatccttattatctaatcctaaactacaatgca 46595821  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 13946647 - 13946706
Alignment:
Q  189 atccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttg 248  Q
    |||||||||||||||||||||| ||||||||||| ||  ||| |||||||||||||||||    
T  13946647 atccttattatctaatcctaaactacaatgcacacaacaattgcaaaaccctaatccttg 13946706  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 20389908 - 20389945
Alignment:
Q  183 atccttatccttattatctaatcctaaagtacaatgca 220  Q
    |||||||||||||||||||||||||||| |||||||||    
T  20389908 atccttatccttattatctaatcctaaactacaatgca 20389945  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 31112505 - 31112468
Alignment:
Q  183 atccttatccttattatctaatcctaaagtacaatgca 220  Q
    |||||||||||||||||| |||||||||||||||||||    
T  31112505 atccttatccttattatcgaatcctaaagtacaatgca 31112468  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 218
Target Start/End: Complemental strand, 6309246 - 6309211
Alignment:
Q  183 atccttatccttattatctaatcctaaagtacaatg 218  Q
    ||||||||||||||||||||||||||| ||||||||    
T  6309246 atccttatccttattatctaatcctaatgtacaatg 6309211  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 4434986 - 4435018
Alignment:
Q  188 tatccttattatctaatcctaaagtacaatgca 220  Q
    ||||||||||||||||||||||| |||||||||    
T  4434986 tatccttattatctaatcctaaactacaatgca 4435018  T

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Target: scaffold0524 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 218
Target Start/End: Original strand, 5126 - 5161
Alignment:
Q  183 atccttatccttattatctaatcctaaagtacaatg 218  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5126 atccttatccttattatctaatcctaatgtacaatg 5161  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 34703765 - 34703828
Alignment:
Q  187 ttatccttattatctaatcctaaagtacaatgcacataagtatttcaaaaccctaatccttgat 250  Q
    ||||||||||| ||||||||||| |||||||||||| |||   |  ||||||||||||||||||    
T  34703765 ttatccttattttctaatcctaatgtacaatgcacacaagacctaaaaaaccctaatccttgat 34703828  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 7131295 - 7131331
Alignment:
Q  182 aatccttatccttattatctaatcctaaagtacaatg 218  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  7131295 aatccttatccttattacctaatcctaaactacaatg 7131331  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 220
Target Start/End: Complemental strand, 37720093 - 37720060
Alignment:
Q  187 ttatccttattatctaatcctaaagtacaatgca 220  Q
    |||||||||||||||||||||||| |||||||||    
T  37720093 ttatccttattatctaatcctaaactacaatgca 37720060  T

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