View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19271_low_57 (Length: 229)
Name: NF19271_low_57
Description: NF19271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19271_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 53426333 - 53426549
Alignment:
| Q |
1 |
tgtttaaaatatgggcatgatcttcgcgaagggaaccattagctgaatgtgcagctcccatatacacaatataaacttgattgtcattctttgattgagg |
100 |
Q |
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| T |
53426333 |
tgtttaaaatatgggcatgatcttcgcgaagggaaccattagttgaatgtgaagctcccatatacacaatataaacttgattgtcattctctgattgagg |
53426432 |
T |
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| Q |
101 |
agttaaggatgatcttgactctccaaggaaaaggaagagtgagtaaaatattagtaccaatagaactgaatttcctttcatgtttagtattctcttaaat |
200 |
Q |
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| T |
53426433 |
agttaaggatgatcttgactctccaaggaaaaggaagagtgagtaaaatattagtaccaatagaactgaatttcctttcatgtttagtattctcttatat |
53426532 |
T |
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| Q |
201 |
tgagcttagctttgatg |
217 |
Q |
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| T |
53426533 |
tgagcttagctttgatg |
53426549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 26099422 - 26099611
Alignment:
| Q |
1 |
tgtttaaaatatgggcatgatcttcgcgaagggaaccattagctgaatgtgcagctcccatatacacaatataaacttgattgtcattctttgattgagg |
100 |
Q |
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||||||||| ||| ||||||||| |||||||||||||||| ||||| || ||||||| |||||||||||||||||||| |||||||||| ||||| |
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| T |
26099422 |
tgtttaaaacatgatcatgatctttacgaagggaaccattagttgaatccacacctcccatgtacacaatataaacttgattttcattctttggttgagt |
26099521 |
T |
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| Q |
101 |
agttaaggatgatcttgactctccaaggaaaaggaagagtgagtaaaatattagtaccaatagaactgaatttcctttcatgtttagtattct |
193 |
Q |
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| T |
26099522 |
agctaaagatgattttaactctccaag---aaggaagagagagtaaaatgttagtatcaagaaaattggatttcttttcatgtttagcattct |
26099611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 53434496 - 53434678
Alignment:
| Q |
4 |
ttaaaatatgggcatgatcttcgcgaagggaaccattagctgaatgtgcagctcccatatacacaatataaacttgattgtcattctttgattgaggagt |
103 |
Q |
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|||||| || ||||||||||| ||||||||||||| ||||| | ||||||||||||||||||||||| |||||| ||||||||||||| | || |
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| T |
53434496 |
ttaaaacataggcatgatctttacgaagggaaccatctattgaatccgtagctcccatatacacaatataaatttgattttcattctttgatttattagc |
53434595 |
T |
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| Q |
104 |
taaggatgatcttgactctccaaggaaaaggaagagtgagtaaaatattagtaccaatagaactgaatttcctttcatgttta |
186 |
Q |
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| T |
53434596 |
taagtatgaccttgactctccaagaagaaggaagagtgagtaaaacactaatatcaataaaattggatttcctttcatgttta |
53434678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 53311123 - 53311194
Alignment:
| Q |
28 |
gaagggaaccattagctgaatgtgcagctcccatatacacaatataaacttgattgtcattctttgattgag |
99 |
Q |
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|||||| || ||||| ||||| |||||||||||| ||||||||||||||||| |||||||||| ||||||| |
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| T |
53311123 |
gaagggtactattagttgaatctgcagctcccatgtacacaatataaacttgtttgtcattctccgattgag |
53311194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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